• DEseq

  • Referenced in 51 articles [sw10344]
  • dependence in count data from high-throughput sequencing assays and test for differential expression based...
  • Minfi

  • Referenced in 6 articles [sw23478]
  • array (the ’450k’ array) provides a high-throughput assay to quantify DNA methylation (DNAm ... genomic features. Although less comprehensive than high-throughput sequencing-based techniques, this product is more...
  • CellProfiler

  • Referenced in 14 articles [sw18751]
  • open-source system designed for flexible, high-throughput cell image analysis, CellProfiler. CellProfiler can address ... variety of biological questions quantitatively, including standard assays (for example, cell count, size, per-cell...
  • propr

  • Referenced in 1 article [sw15745]
  • count data produced by microarray assays or high-throughput RNA-sequencing. As an alternative, Lovell...
  • MuPlex

  • Referenced in 2 articles [sw30947]
  • large-scale multiplex PCR assay design in an automated high-throughput environment, where high coverage...
  • CellAnimation

  • Referenced in 1 article [sw34971]
  • microscopy assays. Advances in microscopy technology have led to the creation of high-throughput microscopes ... suited for a particular type of imaging assay. While it is possible to implement ... open-source high-throughput application that allows implementation of different biological assays such as cell...
  • HTqPCR

  • Referenced in 2 articles [sw29359]
  • HTqPCR: high-throughput analysis and visualization of quantitative real-time PCR data in R. Motivation ... microarray hybridization data and clinical diagnostic assays. Although numerous statistical tools are available ... amenable to the tandem analysis of multiple assays. This is problematic when an experiment involves ... analyzed in a high-throughput facility. Results: We have developed HTqPCR, a package...
  • Starr

  • Referenced in 2 articles [sw20401]
  • assay for DNA-protein-binding or post-translational chromatin/histone modifications. As with all high-throughput...
  • xMAN

  • Referenced in 1 article [sw35339]
  • reference genome is crucial to many high throughput genomic technologies. Results: We propose an intuitive ... assay. xMAN can be further extended for application to other high-throughput genomic technologies...
  • V-Xtractor

  • Referenced in 1 article [sw33186]
  • Xtractor: An Open-Source, High-Throughput Software Tool to Identify and Extract Hypervariable Regions ... reliability and facilitates subsequent analysis in community assays...
  • plateCore

  • Referenced in 1 article [sw14265]
  • plate-based data sets from high-throughput FCM screening experiments easier. plateCore was used ... Peripheral Blood Mononucleocyte Cell (PBMC) samples were assayed for 189 different human cell surface markers...
  • Matlab

  • Referenced in 12309 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8601 articles [sw00771]
  • R is a language and environment for statistical...
  • MIRA

  • Referenced in 1 article [sw02392]
  • MIRA is a multi-pass DNA sequence data...
  • STAR

  • Referenced in 12 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...
  • Bioconductor

  • Referenced in 305 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...
  • GlobPlot

  • Referenced in 8 articles [sw06213]
  • GlobPlot: exploring protein sequences for globularity and disorder...
  • Biopython

  • Referenced in 19 articles [sw07357]
  • Biopython: freely available Python tools for computational molecular...
  • MAFFT

  • Referenced in 41 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...