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  • MAFFT
  • Referenced in 46 articles [sw08304]
  • MAFFT: Multiple alignment program for amino acid or...

  • Soap
  • Referenced in 38 articles [sw08915]
  • SOAP: short oligonucleotide alignment program. We have developed...

  • EMan
  • Referenced in 12 articles [sw09056]
  • EMAN: Semiautomated Software for High-Resolution Single-Particle...

  • PyMOL
  • Referenced in 39 articles [sw09662]
  • PyMOL is a powerful and comprehensive molecular visualization...

  • HMMER
  • Referenced in 19 articles [sw10514]
  • HMMER web server: interactive sequence similarity searching. HMMER...

  • bioperl
  • Referenced in 23 articles [sw10579]
  • The bioperl toolkit: Perl modules for the life...

  • Sweave
  • Referenced in 44 articles [sw10621]
  • Sweave is a tool that allows to embed...

  • EMBOSS
  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...

  • BayesDA
  • Referenced in 1209 articles [sw11008]
  • BayesDA: Functions and Datasets for the book ”Bayesian...

  • SOPRA
  • Referenced in 8 articles [sw12607]
  • SOPRA: scaffolding algorithm for paired reads via statistical...

  • MUSCLE
  • Referenced in 74 articles [sw13193]
  • Muscle: multiple sequence alignment with high accuracy and...

  • GAGE
  • Referenced in 11 articles [sw13528]
  • GAGE: a critical evaluation of genome assemblies and...

  • flowCore
  • Referenced in 12 articles [sw14260]
  • R package flowCore: Basic structures for flow cytometry...

  • Python
  • Referenced in 2042 articles [sw14460]
  • Python is a widely used high-level, general...

  • Samtools
  • Referenced in 22 articles [sw14583]
  • Samtools is a suite of programs for interacting...

  • Jmol
  • Referenced in 13 articles [sw15016]
  • Jmol: an open-source Java viewer for chemical...

  • Plotly
  • Referenced in 22 articles [sw15578]
  • Plotly, also known by its URL, Plot.ly,[1...

  • ANNOTATOR
  • Referenced in 1 article [sw16835]
  • Integrated Tools for Biomolecular Sequence-Based Function Prediction...

  • LIGPLOT
  • Referenced in 5 articles [sw16869]
  • LIGPLOT: a program to generate schematic diagrams of...