• KinasePhos

  • Referenced in 8 articles [sw22468]
  • server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns ... many researches are undertaken to predict the kinase-specific phosphorylation sites. Referred to our previous ... model (HMM) with flanking residues of the kinase-specific phosphorylation sites. Herein...
  • Quokka

  • Referenced in 5 articles [sw27666]
  • tool for rapid and accurate prediction of kinase family-specific phosphorylation sites in the human ... proteome. Motivation: Kinase-regulated phosphorylation is a ubiquitous type of post-translational modification ... computational methods aiming to accurately predict protein kinase family-specific or kinase-specific phosphorylation sites ... users to rapidly and accurately identify human kinase family-regulated phosphorylation sites. Quokka was developed...
  • AutoMotif

  • Referenced in 4 articles [sw35529]
  • Swiss-Prot database (phosphorylation by various protein kinases, sulfation, acetylation, methylation, amidation, etc.). The accuracy...
  • ProCKSI

  • Referenced in 3 articles [sw35361]
  • verification of a classification scheme for protein kinases, originally derived by sequence comparison by Hanks...
  • MinRMS

  • Referenced in 2 articles [sw26877]
  • comparisons of glutamine synthetase (GS) and creatine kinase (CK) done with minRMS. Although...
  • pkaPS

  • Referenced in 1 article [sw27726]
  • pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model...
  • SDTNBI

  • Referenced in 1 article [sw23940]
  • data sets, covering G protein-coupled receptors, kinases, ion channels and nuclear receptors. Furthermore...
  • HuPho

  • Referenced in 1 article [sw29344]
  • HuPho: the human phosphatase portal. Phosphatases and kinases contribute to the regulation of protein phosphorylation...
  • Expression2Kinases

  • Referenced in 1 article [sw34967]
  • matrices (PWMs) data, protein–protein interactions and kinase–substrate phosphorylation reactions, we can better identify...
  • PhosphoPredict

  • Referenced in 0 articles [sw25089]
  • novel bioinformatics approach to predict kinase-specific phosphorylation substrates and sites in the human proteome ... Importantly, PhosphoPredict can be used to predict kinase-specific substrates and the corresponding phosphorylation sites ... human kinases, including ATM, CaM, CDKs, CK1, CK2, GRK, GSK-3, MAPKs ... into the most important determinants of the kinase substrate specificity, PhosphoPredict employs an effective feature...
  • TAMkin

  • Referenced in 0 articles [sw19002]
  • conformational change of the biological system adenylate kinase is studied, as well as the reaction...
  • AUTO

  • Referenced in 943 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...
  • Gromacs

  • Referenced in 124 articles [sw04128]
  • GROMACS is a versatile package to perform molecular...
  • LSODE

  • Referenced in 135 articles [sw04374]
  • LSODE (Livermore Solver for Ordinary Differential Equations) solves...
  • LIBSVM

  • Referenced in 1200 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • PDCO

  • Referenced in 717 articles [sw05148]
  • PDCO: Primal-Dual interior method for Convex Objectives...
  • XPPAUT

  • Referenced in 464 articles [sw05543]
  • XPPAUT is software for the analysis and simulation...
  • fminsearch

  • Referenced in 277 articles [sw07467]
  • Convergence properties of the Nelder--Mead simplex method...
  • DAISY

  • Referenced in 54 articles [sw09059]
  • DAISY: A new software tool to test global...
  • BioNetGen

  • Referenced in 63 articles [sw09072]
  • BioNetGen: software for rule-based modeling of signal...