• CHEMKIN

  • Referenced in 261 articles [sw06684]
  • powerful tools for incorporating complex chemical kinetics into simulations of reacting flow. Using CHEMKIN, researchers...
  • GEPASI

  • Referenced in 34 articles [sw07916]
  • package for modeling biochemical systems. It simulates the kinetics of systems of biochemical reactions...
  • STOCKS

  • Referenced in 13 articles [sw10438]
  • STOCKS: STOChastic kinetic simulations of biochemical systems with Gillespie algorithm. STOCKS, software for the stochastic ... kinetic simulation of biochemical processes is presented. The program uses a rigorously derived Gillespie algorithm...
  • NIMROD

  • Referenced in 28 articles [sw18086]
  • scales found in fusion experiments, Simulation particles for kinetic effects from a minority species...
  • GYSELA

  • Referenced in 44 articles [sw17825]
  • drift-kinetic semi-Lagrangian 4D code for ion turbulence simulation. A new code is presented ... LAgragian (GYSELA) code, which solves 4D drift-kinetic equations for ion temperature gradient driven turbulence ... found to be stable over long simulation times (more than 20 times the linear growth...
  • APBS

  • Referenced in 92 articles [sw05766]
  • including simulation of diffusional processes to determine ligand-protein and protein-protein binding kinetics, implicit...
  • MCAMC

  • Referenced in 11 articles [sw02829]
  • MCAMC: an advanced algorithm for kinetic Monte Carlo simulations from magnetization switching to protein folding ... MCAMC) method for extremely long kinetic Monte Carlo simulations. The MCAMC algorithm does not modify...
  • SPPARKS

  • Referenced in 8 articles [sw04146]
  • acronym for Stochastic Parallel PARticle Kinetic Simulator. SPPARKS is a parallel Monte Carlo code ... lattice models that includes algorithms for kinetic Monte Carlo (KMC), rejection kinetic Monte Carlo (rKMC...
  • iPIC3D

  • Referenced in 12 articles [sw18145]
  • Particle-in-Cell method for the computer simulation of plasma, and its implementation ... numerical stability constraints and it enables kinetic plasma simulations at magnetohydrodynamics time scales. Simulations...
  • KinFitSim

  • Referenced in 6 articles [sw09290]
  • KinFitSim® 3.0: Kinetics simulation and fitting software. KinFitSim 3.0 is a tool for simulating complex ... numerical simulation may yield important information about system kinetics when kinetic parameters of the model ... being concerned with numerical methods. It automatically simulates the time-course of chemical or biochemical ... reaction mechanism, kinetics of each reaction and initial concentrations of all species. Simulated data...
  • ELSIM

  • Referenced in 4 articles [sw09163]
  • user-friendly PC program for electrochemical kinetic simulations. Version 1.0—Solution of integral equations ... simulation of electrochemical kinetic transients have been formulated. The first version of the program enables ... formula translator allows the user’s own kinetic problems to be studied without modifying ... program. Algorithms for easy analysis of the simulation results, a “Help” facility and screen graphics...
  • ReaDDy

  • Referenced in 4 articles [sw17865]
  • introduce the software package ReaDDy for simulation of detailed spatiotemporal mechanisms of dynamical processes ... contrast to other particle-based reaction kinetics programs, ReaDDy supports particle interaction potentials. This permits ... aggregation to be modeled. The biomolecules simulated can be represented as a sphere ... large-scale but little-detailed reaction kinetics simulations. ReaDDy has a modular design that enables...
  • OpenSMOKE++

  • Referenced in 5 articles [sw22162]
  • general framework for numerical simulations of reacting systems with detailed kinetic mechanisms, including thousands ... program. The OpenSMOKE++ framework can handle simulations of ideal chemical reactors (plug-flow, batch ... kinetic point of view. Since simulations involving large kinetic mechanisms are very time consuming, OpenSMOKE...
  • GKW

  • Referenced in 3 articles [sw10271]
  • nonlinear gyro-kinetic flux tube code (GKW) for the simulation of micro instabilities and turbulence ... state of the art gyro-kinetic simulation code in the local limit: kinetic electrons, electromagnetic...
  • MPSalsa

  • Referenced in 24 articles [sw06960]
  • resolution 3D simulations with an equal emphasis on fluid flow and chemical kinetics modeling...
  • AWECS

  • Referenced in 3 articles [sw20546]
  • linear gyrokinetic delta-f particle-in-cell simulation code for the study of Alfvenic instabilities ... called AWECS is developed to study the kinetic excitation of Alfvenic instabilities in a high ... example, AWECS is capable of simulating kinetic ballooning modes, Alfvenic ion-temperature-gradient-driven modes...
  • SpectralPlasmaSolver

  • Referenced in 8 articles [sw23232]
  • OpenMP. As a verification example, we discuss simulations of the two-dimensional Orszag-Tang vortex ... compare them against a fully kinetic Particle-In-Cell simulation. An assessment of the performance...
  • smfsb

  • Referenced in 6 articles [sw12260]
  • data for modelling and simulation of stochastic kinetic biochemical network models. It contains the code...
  • PANDAT

  • Referenced in 2 articles [sw27262]
  • component phase diagram calculation and materials property simulation. The newly enhanced PANDAT, integrating PanEngine, PanOptimizer ... bridges thermodynamic calculation, property optimization, and kinetic simulation of multi-component systems based on CALPHAD ... multi-component systems. The simulation results, which include thermodynamic, kinetic, thermo-physical properties, and microstructure...
  • WHAM

  • Referenced in 11 articles [sw18138]
  • that remains difficult to simulate is when the energy scales (kinetic, thermal, magnetic) within...