• PLINK

  • Referenced in 66 articles [sw04581]
  • genome association analysis toolset, designed to perform a range of basic, large-scale analyses...
  • ESTScan

  • Referenced in 2 articles [sw23817]
  • problems associated with the large-scale analysis of unannotated, low quality EST sequences...
  • pi-MASS

  • Referenced in 20 articles [sw17249]
  • studies and similar large-scale regression problems. Currently, typical genome-wide association studies measure hundreds ... regression. Characteristic features of genome-wide association studies include the following: (i) a focus primarily ... penalized regression methods. We focus primarily on analysis of quantitative phenotypes, and on appropriate prior ... provide useful inferences in these large-scale problems, and in our simulations produces better power...
  • RSS

  • Referenced in 2 articles [sw23316]
  • large-scale multiple regression provide attractive approaches to the analysis of genome-wide association studies...
  • P2BAT

  • Referenced in 2 articles [sw25497]
  • PBAT-analysis tools for family-based association tests (FBATs) in large-scale studies, including genome ... problem in family-based association studies, P2BAT integrates all PBAT-analysis tools for binary...
  • mirtjml

  • Referenced in 2 articles [sw36870]
  • Structured Latent Factor Analysis for Large-scale Data: Identifiability, Estimability, and Their Implications. Journal ... American Statistical Association,
  • SOFAR

  • Referenced in 7 articles [sw31665]
  • enabled by understanding the large-scale response-predictor association network structures via layers of sparse ... sparsity and orthogonality have been two largely incompatible goals. To accommodate both features, in this ... orthogonality constrained optimization to learn the underlying association networks, with broad applications to both unsupervised ... sparse singular value decomposition, sparse principal component analysis, sparse factor analysis, and spare vector autoregression...
  • MOLNs

  • Referenced in 2 articles [sw16724]
  • compute and data analysis resources due to the large computational cost associated with Monte Carlo ... setting up and managing a large-scale distributed computation environment to support productive and reproducible...
  • GERBIL

  • Referenced in 4 articles [sw17194]
  • promise of revolutionizing disease studies and the association of phenotypes with individual polymorphisms ... phasing in the presence of recombination. Our analysis is based on a stochastic model ... tested gerbil on four large-scale sets of genotypes. It outperformed two state...
  • MULTIFAN-CL

  • Referenced in 2 articles [sw30316]
  • associated software were developed as an analytical tool for fisheries in which large-scale ... statistically-based, robust method of length-frequency analysis that was an alternative to several...
  • RnBeads

  • Referenced in 1 article [sw29564]
  • large-scale analysis and interpretation of DNA methylation data, providing a user-friendly analysis workflow ... applications of RnBeads include the analysis of epigenome-wide association studies and epigenetic biomarker discovery...
  • RapidMic

  • Referenced in 1 article [sw34562]
  • Coefficient. To discover relationships and associations rapidly in large-scale datasets, we propose a cross ... provided tool can effectively analyze large-scale biological datasets with a markedly reduced computing time ... able to perform an all-pairs analysis of a large biological dataset using a normal...
  • Screensaver

  • Referenced in 2 articles [sw21449]
  • common in academe as large-scale small molecule and genome-scale RNAi screening strategies ... analysis of screening data, but must also manage the administrative and technical challenges associated with...
  • GBMCI

  • Referenced in 2 articles [sw11476]
  • propose a nonparametric model for survival analysis that does not explicitly assume particular forms ... hazard function varies according to the associated covariates. The ensemble model is trained using ... other popular survival models with a large-scale breast cancer prognosis dataset. Our experiment shows...
  • ShapePheno

  • Referenced in 1 article [sw14414]
  • from biological image collections. Motivation: Accurate large-scale phenotyping has recently gained considerable importance ... biology. For example, in genome-wide association studies technological advances have rendered genotyping cheap, leaving ... acquisition as the major bottleneck. Automatic image analysis is one major strategy to phenotype individuals...
  • PONDR-FIT

  • Referenced in 2 articles [sw16904]
  • structure, many regions of disorder have been associated with biological function. There are many different ... useful strategy especially for many large-scale proteomic investigations. Here we introduced a consensus artificial ... predictors, depending on the datasets being used. Analysis of the errors shows that the worst...
  • HoVer-Net

  • Referenced in 2 articles [sw39635]
  • opening up possibilities of further analysis of large-scale nuclear morphometry. However, automated nuclear segmentation ... types of nuclei, some of them exhibiting large intra-class variability such as the tumour ... containing 24,319 exhaustively annotated nuclei with associated class labels...
  • SeqBuster

  • Referenced in 1 article [sw29583]
  • based toolkit to process and analyze large-scale small RNA datasets. The high flexibility ... analysis for mapping purposes and in the different analysis modules for data manipulation. To overcome ... types of isomiRs, some of them being associated to stem cell differentiation. The exhaustive description...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • CoCoA

  • Referenced in 654 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...