• MOLNs

  • Referenced in 2 articles [sw16724]
  • computational experiments in systems biology using pyurdme. Computational experiments using spatial stochastic simulations have ... specialized tools and a complex software stack, as well as large and scalable compute ... computational workflows. The complexity of setting up and managing a large-scale distributed computation environment ... systems biology. This results in a barrier to the adoption of spatial stochastic simulation tools...
  • BluePyOpt

  • Referenced in 0 articles [sw37639]
  • many scales in neuroscience, appropriate mathematical models take the form of complex dynamical systems. Parametrising ... complex fitness landscape, requiring numerical techniques to find suitable approximate solutions. Stochastic optimisation approaches, such ... setting up both small- and large-scale optimisations on a variety of platforms, ranging from...
  • ADOL-C

  • Referenced in 249 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ANSYS

  • Referenced in 704 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ARMS

  • Referenced in 65 articles [sw00048]
  • ARMS: an algebraic recursive multilevel solver for general...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Coq

  • Referenced in 1890 articles [sw00161]
  • Coq is a formal proof management system. It...
  • CSDP

  • Referenced in 202 articles [sw00169]
  • CSDP, A C Library for Semidefinite Programming. This...
  • Diffpack

  • Referenced in 115 articles [sw00203]
  • As modern programming methodologies migrate from computer science...
  • HSL

  • Referenced in 279 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • hypre

  • Referenced in 329 articles [sw00426]
  • hypre is a software library for the solution...
  • ISOGAT

  • Referenced in 310 articles [sw00457]
  • A tutorial 2D MATLAB code for solving elliptic...
  • KNITRO

  • Referenced in 197 articles [sw00490]
  • KNITRO is a solver for nonlinear optimization. It...
  • LANCELOT

  • Referenced in 306 articles [sw00500]
  • LANCELOT. A Fortran package for large-scale nonlinear...
  • LAPACK

  • Referenced in 1702 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LSQR

  • Referenced in 394 articles [sw00530]
  • Algorithm 583: LSQR: Sparse Linear Equations and Least...
  • MapReduce

  • Referenced in 263 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • MATCONT

  • Referenced in 443 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...