• Mauve

  • Referenced in 15 articles [sw24606]
  • they undergo large-scale evolutionary processes that present a challenge to sequence comparison not posed...
  • SS-Wrapper

  • Referenced in 2 articles [sw30878]
  • searches on Linux clusters. Background: Large-scale sequence comparison is a powerful tool for biological...
  • LEON

  • Referenced in 2 articles [sw24616]
  • predictions is demonstrated in large-scale comparisons with structural and sequence family databases, where...
  • VarScan

  • Referenced in 7 articles [sw27471]
  • undergo capture and sequencing with identical protocols, this read depth comparison approach is quite ... sensitive to detect both focal and large-scale CNAs...
  • LASSAP

  • Referenced in 3 articles [sw33234]
  • large scale sequence comparison package. This paper presents LASSAP, a new software package for sequence ... sequence comparison programs in order to fit the needs of large-scale analysis. LASSAP provides ... such as: (i) intra- and inter-databank comparisons; (ii) computational requests (selections and computations ... specialized hardware. LASSAP currently implements all major sequence comparison algorithms (Fasta, Blast, Smith/Waterman), and other...
  • STELLAR

  • Referenced in 1 article [sw34362]
  • STELLAR: Large-scale comparison of genomic sequences requires reliable tools for the search of local...
  • iDNA-Prot

  • Referenced in 16 articles [sw22410]
  • proteins included has ≥25% pairwise sequence identity to any other in a same subset ... iDNA-Prot is remarkably shorter in comparison with the relevant existing predictors. Hence ... useful high throughput tool for large-scale analysis of DNA-binding proteins. As a user...
  • Cluster-C

  • Referenced in 6 articles [sw10932]
  • algorithm for the large-scale clustering of protein sequences based on the extraction of maximal ... sequence similarity, it has been widely proved that all-vs-all massive sequence comparisons...
  • LSD-SLAM

  • Referenced in 7 articles [sw18885]
  • regarding direct methods, allows to build large-scale, consistent maps of the environment. Along with ... over a large number of pixelwise small-baseline stereo comparisons. The explicitly scale-drift aware ... allows the approach to operate on challenging sequences including large variations in scene scale. Major...
  • DiagHunter

  • Referenced in 1 article [sw36927]
  • GenoPix2D: programs for genomic comparisons, large-scale homology discovery and visualization. The DiagHunter and GenoPix2D ... enable genomic comparisons and exploration at both genome-wide and single-gene scales. DiagHunter identifies ... between genomes. DiagHunter works efficiently with diverse, large datasets to predict extended and interrupted synteny ... well as querying by annotation and by sequence similarity...
  • M-GCAT

  • Referenced in 1 article [sw22997]
  • assembled, and (2) the comparison is reference-sequence biased. Further details on the M-GCAT ... GCAT: Interactively and efficiently constructing large-scale multiple genome comparison frameworks in closely related species...
  • EFICAz

  • Referenced in 3 articles [sw35281]
  • Approach) is an automatic engine for large-scale enzyme function inference that combines predictions from ... Enzyme Family classification (CHIEFc), (ii) pairwise sequence comparison using a family specific Sequence Identity Threshold...
  • CMASA

  • Referenced in 1 article [sw35231]
  • used in the large-scale functional annotation. Comparing to both sequence-based and global structure ... site convergence. Comparing to other local structure comparison-based methods, the CMASA can obtain ... CMASA can be used in large-scale enzyme active site annotation. The CMASA...
  • QuartetS

  • Referenced in 2 articles [sw34206]
  • leveraging evolutionary evidence in the accumulated sequenced genomes. Here, we report a novel orthology detection ... based metrics to perform a large-scale, systematic comparison of the orthology predictions of QuartetS...
  • Keypy

  • Referenced in 1 article [sw31799]
  • detection of brain state duration, occurrence, and sequence aberrations in psychiatric disorders such as schizophrenia ... efficient automated analyses and parameter exploration of large EEG datasets. Scriptable programming languages such ... analysis of large-scale EEG datasets from psychiatric patient populations and their comparison to healthy...
  • Coq

  • Referenced in 1828 articles [sw00161]
  • Coq is a formal proof management system. It...
  • HSL

  • Referenced in 274 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • LAPACK

  • Referenced in 1648 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LSQR

  • Referenced in 372 articles [sw00530]
  • Algorithm 583: LSQR: Sparse Linear Equations and Least...
  • Mathematica

  • Referenced in 6075 articles [sw00554]
  • Almost any workflow involves computing results, and that...