• Mathematica

• Referenced in 6355 articles [sw00554]
• Almost any workflow involves computing results, and that...

• Qhull

• Referenced in 320 articles [sw04419]
• The convex hull of a point set P...

• PHiPAC

• Referenced in 53 articles [sw04898]
• The PHiPAC (Portable High Performance ANSI C) Page...

• PHYLIP

• Referenced in 102 articles [sw07694]
• PHYLIP is a free package of programs for...

• RAxML

• Referenced in 44 articles [sw07716]
• Parallel inference of a 10.000-taxon phylogeny with...

• PAUP*

• Referenced in 57 articles [sw07834]
• PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0...

• Notung

• Referenced in 13 articles [sw08917]
• NOTUNG: A Program for Dating Gene Duplications and...

• bioperl

• Referenced in 23 articles [sw10579]
• The bioperl toolkit: Perl modules for the life...

• PAML

• Referenced in 43 articles [sw10916]
• Phylogenetic Analysis by Maximum Likelihood (PAML). PAML is...

• ClustalW

• Referenced in 138 articles [sw12016]
• CLUSTAL W: improving the sensitivity of progressive multiple...

• GIGA

• Referenced in 4 articles [sw29606]
• GIGA: a simple, efficient algorithm for gene tree...

• TreeFix

• Referenced in 6 articles [sw29607]
• TreeFix: statistically informed gene tree error correction using...