• PySB

  • Referenced in 12 articles [sw13437]
  • libraries of reusable elements (macros) that encode standard biochemical actions. These features promote model transparency...
  • FOBS

  • Referenced in 1 article [sw13683]
  • interface to the external environment, allowing scripting actions to be carried out.par FOBS is structured ... reduced to a core language by macro expansion. Our paper provides an introduction...
  • BioBrowser

  • Referenced in 1 article [sw00079]
  • function of different parts/structures of a macro molecule (protein, DNA, RNA) directly into ... model of the molecule. All these actions are performed on sub structures of the molecules...
  • Gmsh

  • Referenced in 767 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • SageMath

  • Referenced in 1994 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • GLIM

  • Referenced in 193 articles [sw01126]
  • GLIM - a system for interactive fitting of generalized...
  • FreeFem++

  • Referenced in 1369 articles [sw01436]
  • FreeFem++ is an implementation of a language dedicated...
  • Ada95

  • Referenced in 293 articles [sw01753]
  • Ada is a structured, statically typed, imperative, wide...
  • PVS

  • Referenced in 629 articles [sw03484]
  • PVS is a verification system: that is, a...
  • PETSc

  • Referenced in 1584 articles [sw04012]
  • The Portable, Extensible Toolkit for Scientific Computation (PETSc...
  • FFTW

  • Referenced in 549 articles [sw04126]
  • FFTW is a C subroutine library for computing...
  • FEniCS

  • Referenced in 840 articles [sw04314]
  • The FEniCS Project is a collaborative project for...
  • GSL

  • Referenced in 261 articles [sw05883]
  • The GNU Scientific Library (GSL) is a numerical...
  • SAS/OR

  • Referenced in 7 articles [sw06279]
  • SAS/OR software provides a powerful array of optimization...
  • SciPy

  • Referenced in 775 articles [sw06293]
  • SciPy (pronounced ”Sigh Pie”) is open-source software...