• R/qtl

  • Referenced in 14 articles [sw20451]
  • R/qtl includes facilities for estimating genetic maps, identifying genotyping errors, and performing single-QTL genome ... dimensional genome scans, by interval mapping (with the EM algorithm), Haley-Knott regression, and multiple...
  • CONTENT

  • Referenced in 37 articles [sw01058]
  • Sommerfeld’s efFect. In this example the map is defined by the time integration ... dimensional dynamical system over a fixed time interval...
  • RedHom

  • Referenced in 12 articles [sw08776]
  • numbers, torsion coefficients, homology generators, persistence intervals and maps induced in homology. The library...
  • MapQTL

  • Referenced in 2 articles [sw24574]
  • MapQTL: Software for the mapping of quantitative trait loci in experimental populations of diploid ... species. Analyse your QTL experiments with interval mapping, with the powerful MQM mapping (=composite interval...
  • ICIMapping

  • Referenced in 2 articles [sw20323]
  • maps and maps QTL by simple interval mapping and inclusive composite interval mapping...
  • classInt

  • Referenced in 5 articles [sw24930]
  • used methods for choosing univariate class intervals for mapping or other graphics purposes...
  • bayestestR

  • Referenced in 12 articles [sw29804]
  • Maximum A Posteriori (MAP), measures of dispersion (Highest Density Interval - HDI; Kruschke...
  • wgaim

  • Referenced in 2 articles [sw24573]
  • package wgaim: Whole Genome Average Interval Mapping for QTL Detection using Mixed Models. Integrates sophisticated...
  • TRIOPT

  • Referenced in 6 articles [sw02486]
  • each partition are mapped into the zero one interval by a nonlinear transformation function...
  • lmem.qtler

  • Referenced in 0 articles [sw15871]
  • while multi-environment and multi-trait QTL mapping is performed through linear mixed models. These ... Single Marker Analysis, a Single Interval Mapping, or a Composite Interval Mapping analysis, and then...
  • surface_dynamics

  • Referenced in 3 articles [sw38631]
  • adds functionality related to interval exchange transformations, translation surfaces, mapping classes and more...
  • Circos

  • Referenced in 5 articles [sw27740]
  • genomic intervals. Such data are routinely produced by sequence alignments, hybridization arrays, genome mapping...
  • RSEM

  • Referenced in 12 articles [sw17160]
  • data is the handling of reads that map to multiple genes or isoforms. This issue ... data. RSEM outputs abundance estimates, 95% credibility intervals, and visualization files and can also simulate ... RSEM’s ability to effectively use ambiguously-mapping reads, we show that accurate gene-level...
  • MapGAM

  • Referenced in 0 articles [sw16679]
  • Includes convenient functions for mapping point estimates and confidence intervals, efficient control sampling, and permutation...
  • DEQuadrature

  • Referenced in 1 article [sw12625]
  • interval. The secondary function of this module computes the parameters of the conformal map...
  • imfamily

  • Referenced in 2 articles [sw29073]
  • square processes for gene mapping in a population with family structure. The objective of this ... called QTL) is considered on the interval representing a chromosome. New fast methods to compute...
  • tilingArray

  • Referenced in 1 article [sw25752]
  • Bioconductor/R package tilingArray: Transcript mapping with high-density oligonucleotide tiling arrays. The package provides functionality ... function ’confint’ for calculating confidence intervals using the strucchange package; 4. the function ’plotAlongChrom...
  • UnstableManifoldCompactMap

  • Referenced in 1 article [sw22780]
  • point of a compact infinite dimensional analytic map. Even though the method involves several layers ... float- ing point round-off errors (or interval arithmetic), leads to mathematically rigorous computer assisted...
  • CrossMap

  • Referenced in 0 articles [sw37651]
  • Several useful conversion tools can convert genome interval files in browser extensible data or general ... functionality to convert files in sequence alignment map or BigWig format. This is a significant...
  • Anya

  • Referenced in 2 articles [sw31694]
  • pair of points on a grid map such that the path is not artificially constrained ... searching over sets of states represented as intervals. Each interval is identified...