• MESSI

  • Referenced in 21 articles [sw33875]
  • linear networks. We show that, under mass-action kinetics, MESSI systems are conservative. We simplify...
  • Cellerator

  • Referenced in 8 articles [sw09926]
  • embedded in each node. Interactions include mass-action, enzymatic, allosteric and connectionist models. Reactions...
  • CRNSimulator

  • Referenced in 3 articles [sw33636]
  • expressions. It allows mixing and matching mass-action kinetics with other kinds of dynamics...
  • MASSpy

  • Referenced in 1 article [sw41441]
  • dynamic biological models in Python using mass action kinetics. Mathematical models of metabolic networks utilize ... challenge. Here, we present the Mass Action Stoichiometric Simulation Python (MASSpy) package, an open-source ... dynamic modeling of metabolism. MASSpy utilizes mass action kinetics and detailed chemical mechanisms to build...
  • HSimulator

  • Referenced in 2 articles [sw22841]
  • HSimulator is a multithread simulator for mass-action biochemical reaction systems placed in a well...
  • CRN++

  • Referenced in 2 articles [sw33637]
  • language for programming deterministic (mass-action) chemical kinetics to perform computation. We present its syntax...
  • QUDA

  • Referenced in 11 articles [sw14040]
  • following fermion actions: Wilson; Clover-improved Wilson; Twisted mass (degenerate or non-degenerate); Twisted mass...
  • ReactOp

  • Referenced in 1 article [sw22146]
  • Models that obey the law of mass action (reaction rate is proportional to concentrations ... that obey the generalized law of mass action (non-integer values of effective orders...
  • Facile

  • Referenced in 1 article [sw28767]
  • model. Facile implements the law of mass action to automatically compile a biochemical network (written ... bifurcation analysis (AUTO). Facile automatically identifies mass conservations and generates the reduced form...
  • BMCSER

  • Referenced in 1 article [sw29888]
  • Mathematica with applications. Biochemical mechanisms with mass action kinetics are usually modeled as systems...
  • Catalyst.jl

  • Referenced in 1 article [sw41453]
  • easy simulation and parameter estimation of mass action ODE models, Chemical Langevin SDE models, stochastic...
  • LASSIE

  • Referenced in 1 article [sw29330]
  • Ordinary Differential Equations (ODEs), assuming mass-action kinetics. The numerical solution of the ODEs...
  • EpiFire

  • Referenced in 1 article [sw31626]
  • well as traditional non-network mass-action simulations, can be performed using EpiFire. Conclusions: EpiFire...
  • KINSOLVER

  • Referenced in 1 article [sw00488]
  • chemical reaction networks, satisfying standard multiplicative mass-action kinetics, of arbitrary size, topology, rate constants...
  • corr2el

  • Referenced in 3 articles [sw10319]
  • electron atom having infinite nuclear mass. An iterative approach based on the implicitly restarted Arnoldi ... matrix is never explicitly computed. Instead the action of the Hamiltonian operator on discrete pair...
  • Diffpack

  • Referenced in 115 articles [sw00203]
  • As modern programming methodologies migrate from computer science...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • FGb

  • Referenced in 247 articles [sw00286]
  • FGb/Gb libraryGb is a program (191 420 lines...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...