• PhyloNet

  • Referenced in 10 articles [sw20725]
  • fitness to sequence evolution under a maximum parsimony criterion; and (4) evolutionary network reconstruction: reconstructing...
  • phangorn

  • Referenced in 8 articles [sw08311]
  • trees and networks using Maximum Likelihood, Maximum Parsimony, Distance methods & Hadamard conjugation...
  • Rec-I-DCM3

  • Referenced in 6 articles [sw29614]
  • hard optimization problems such as maximum parsimony (MP) and maximum likelihood (ML). Conventional MP heuristics...
  • SEAVIEW

  • Referenced in 4 articles [sw22985]
  • neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with...
  • PHYLO_WIN

  • Referenced in 4 articles [sw22986]
  • neighbor joining with numerous distance estimates, maximum parsimony, maximum likelihood), and a bootstrap analysis with...
  • SuperTriplets

  • Referenced in 3 articles [sw29604]
  • first inferred and then a maximum parsimony (MP) analysis is performed on it. This binary...
  • ContaminatedMixt

  • Referenced in 16 articles [sw21014]
  • introduce parsimony. The expectation-conditional maximization algorithm is adopted to obtain maximum likelihood parameter estimates...
  • POY

  • Referenced in 2 articles [sw38916]
  • defined sequences. In addition to the maximum-parsimony optimality criterion supported by POY4, POY5 supports...
  • CollHaps

  • Referenced in 2 articles [sw35234]
  • Heuristic Approach to Haplotype Inference by Parsimony. Haplotype data play a relevant role in several ... such techniques are based on the maximum parsimony principle, which has been justified by both...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • previous versions of PAUP: Phylogenetic Analysis Using Parsimony has made it the most widely used ... field. With the inclusion of maximum likelihood and distance methods in PAUP...
  • Mixmod

  • Referenced in 37 articles [sw06991]
  • yield different strategies for obtaining a sensible maximum for the likelihood (or complete-data likelihood ... Moreover, different information criteria for choosing a parsimonious model (the number of mixture components...
  • Pylogeny

  • Referenced in 1 article [sw28977]
  • phylogenetic trees by Maximum Likelihood (calculated as log-likelihood) and Parsimony. Build confidence sets...
  • ctsem

  • Referenced in 3 articles [sw15514]
  • bias due to varying measurement intervals; parsimonious structures for complex dynamics. The application of such ... this SEM framework allows full-information maximum-likelihood estimates for both...
  • VADER

  • Referenced in 5 articles [sw39061]
  • VADER: A Parsimonious Rule-Based Model for Sentiment Analysis of Social Media Text. The inherent ... learning oriented techniques relying on Naive Bayes, Maximum Entropy, and Support Vector Machine (SVM) algorithms ... emphasizing sentiment intensity. Interestingly, using our parsimonious rule-based model to assess the sentiment...
  • Varun

  • Referenced in 4 articles [sw13191]
  • allowed to stretch up to some prescribed maximum length. In this paper, a notion ... regions of constant frequency afford us significant parsimony in the generation and testing of candidate...
  • Quartets MaxCut

  • Referenced in 7 articles [sw29616]
  • reconstruction methods are currently limited to a maximum of few dozens of taxa. Supertree methods ... outperforms and outraces the Matrix Representation with Parsimony (MRP) methods that have previously been most...
  • SuperFine

  • Referenced in 3 articles [sw29605]
  • phylogeny estimation where phylogenetic analyses based upon maximum likelihood (ML) are infeasible. In this paper ... sequences. Furthermore, SuperFine-boosted matrix representation with parsimony (MRP, the most well-known supertree method...
  • longQDA

  • Referenced in 1 article [sw20397]
  • QDA.Two multivariate mixed model classes with a parsimonious parametrization are proposed: multivariate random effects models ... first model class. The restricted maximum likelihood estimation of Kronecker product models is accomplished...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • GGobi

  • Referenced in 47 articles [sw00345]
  • GGobi is an open source visualization program for...