• MALLET

  • Referenced in 23 articles [sw10602]
  • Decision Trees), and code for evaluating classifier performance using several commonly used metrics. In addition...
  • TreeOfTrees

  • Referenced in 2 articles [sw19157]
  • trees is based on several tree metrics, leading to a unique tree labelled...
  • Gaphyl

  • Referenced in 3 articles [sw10527]
  • technique for finding cladograms, and a tree evaluation metric from a common cladistics software package ... find more of the best known trees with less computational effort than Phylip is able...
  • Garamon

  • Referenced in 8 articles [sw30354]
  • This paper also details how a prefix tree can represent efficiently the dual ... with any arbitrary metric. Garamon takes advantage of the prefix tree formulation to implement Geometric...
  • STXXL

  • Referenced in 19 articles [sw06824]
  • external memory algorithms for computing minimum spanning trees, connected components, breadth-first search decompositions, constructing ... suffix arrays, and computing social network analysis metrics for huge graphs...
  • GTS

  • Referenced in 20 articles [sw05359]
  • surfaces meshed with interconnected triangles. It features metric operations (area, volume, curvature, etc.), 2D Delaunay ... coarsening (multiresolution models), and bounding-boxes trees for collision/intersection detection...
  • ANN

  • Referenced in 46 articles [sw09854]
  • class of distance functions called Minkowski metrics. These include the well known Euclidean distance, Manhattan ... different data structures, based on kd-trees and box-decomposition trees, and employs a couple...
  • DECKARD

  • Referenced in 8 articles [sw09181]
  • identifying similar subtrees and apply it to tree representations of source code. Our algorithm ... metric. Subtrees with vectors in one cluster are considered similar. We have implemented our tree...
  • SCALEA

  • Referenced in 16 articles [sw02477]
  • programs. It computes a variety of performance metrics based on a novel overhead classification. SCALEA ... that allows to instrument an abstract syntax tree at a very high-level with ... view a large variety of performance metrics at the level of arbitrary code regions, threads...
  • gromovlab

  • Referenced in 1 article [sw24011]
  • Animals for the Zoo of Metrics on Tree Space. preprint arXiv:1504.05795, for phylogenetic trees...
  • STAMP

  • Referenced in 6 articles [sw17264]
  • multiple alignments, familial binding profiles and similarity trees when more than one motif is inputted ... metrics, alignment methods (local or global, gapped or ungapped), multiple alignment strategies and tree-building...
  • GIGA

  • Referenced in 4 articles [sw29606]
  • every step in the agglomeration process, the tree is interpreted/reinterpreted in terms of the evolutionary ... distance metric (pairwise sequence differences) and no distance averaging over clades during the tree construction...
  • RANN

  • Referenced in 3 articles [sw24244]
  • Neighbour Search (Wraps ANN Library) Using L2 Metric. Finds the k nearest neighbours for every ... trees. The distance is computed using the L2 (Euclidean) metric. Please see package ’RANN.L1...
  • PyTransport

  • Referenced in 16 articles [sw26567]
  • approach to inflationary cosmology to calculate the tree-level power-spectrum and bispectrum of user ... inflation with a curved field space metric...
  • EVFDT

  • Referenced in 0 articles [sw23093]
  • threshold for node splitting. To resolve the tree size expansion under extreme noise, a lightweight ... performance of EVFDT, four metrics are evaluated: classification accuracy, tree size, time, and memory. Simulation...
  • chillR

  • Referenced in 0 articles [sw37637]
  • conditions and heat. Fruit tree scientists (pomologists) have developed some metrics to quantify chilling...
  • rminer

  • Referenced in 1 article [sw16693]
  • functions. Versions: 1.4.2 new NMAE metric, ”xgboost” and ”cv.glmnet” models (16 classification and 18 regression ... classification and 15 regression methods, including: Decision Trees, Neural Networks, Support Vector Machines, Random Forests ... classification and regression metrics (improved mmetric function); 1.2 - new input importance methods (improved Importance function...
  • QuartetS

  • Referenced in 2 articles [sw34206]
  • approximate phylogenetic analysis of quartet gene trees to infer the occurrence of duplication events ... genes. We used function- and phylogeny-based metrics to perform a large-scale, systematic comparison...
  • Phylocom

  • Referenced in 3 articles [sw27224]
  • evolutionary analyses. Capabilities: Phylocom calculates numerous metrics of phylogenetic community structure and trait similarity within ... functions allow community and phylogenetic data manipulation, tree and trait generation, and integration into scientific...
  • TriLoNet

  • Referenced in 1 article [sw36903]
  • therefore useful to have efficiently computable metrics with which to systematically compare such networks. Through ... slightly more general than an evolutionary tree), here we propose a cubic-time algorithm ... also present a comparison between the trinet metric and the so-called Robinson-Foulds phylogenetic...