• RedMD

  • Referenced in 1 article [sw32713]
  • perform molecular dynamics simulations in a microcanonical ensemble, with Berendsen and Langevin thermostats, and with ... used for code parallelization. The code is distributed under GNU public licence and available...
  • GradSamp

  • Referenced in 110 articles [sw05270]
  • A robust gradient sampling algorithm for nonsmooth, nonconvex...
  • BioProspector

  • Referenced in 29 articles [sw09375]
  • BioProspector: discovering conserved DNA motifs in upstream regulatory...
  • tsbridge

  • Referenced in 165 articles [sw12354]
  • tsbridge: Calculate normalising constants for Bayesian time series...
  • BN2DMD

  • Referenced in 1 article [sw16950]
  • Molecular dynamics implementation of BN2D or `Mercedes Benz...
  • CisModule

  • Referenced in 5 articles [sw35646]
  • CisModule: A Bayesian module sampler by hierachical mixture...