• CAViaR

  • Referenced in 172 articles [sw04424]
  • autoregressive value at risk (CAViaR) model specifies the evolution of the quantile over time using ... information, we introduce a new test of model adequacy, the dynamic quantile test. Applications...
  • PYTHIA8

  • Referenced in 134 articles [sw09347]
  • coherent set of physics models for the evolution from a few-body hard process ... contains a library of hard processes and models for initial- and final-state parton showers...
  • Darwin

  • Referenced in 26 articles [sw04175]
  • first implementation of the Model Evolution Calculus (see papers below). The Model Evolution Calculus lifts...
  • Seq-Gen

  • Referenced in 31 articles [sw08310]
  • evolution of nucleotide or amino acid sequences along a phylogeny, using common models ... substitution process. A range of models of molecular evolution are implemented including the general reversible ... commonly used (and computationally tractable) models of molecular sequence evolution. The paper cited above contains...
  • E-Darvin

  • Referenced in 20 articles [sw06852]
  • clausifier). E-Darwin implements the Model Evolution calculus and several variants thereof which include equality...
  • phytools

  • Referenced in 14 articles [sw10003]
  • state estimation; visual simulation of trait evolution; fitting models of trait evolution with multiple Brownian ... other models of continuous trait evolution; fitting a model of correlated binary trait evolution; locating ... from their posterior probability distribution under a model; conducting a multiple (i.e., partial) Mantel test...
  • AGG

  • Referenced in 49 articles [sw04449]
  • based semantics to some system model, graph transformation based evolution of software, and the definition...
  • SIMSON

  • Referenced in 40 articles [sw13385]
  • number of different subgrid-scale models are available. The evolution of multiple passive scalars...
  • Henshin

  • Referenced in 11 articles [sw10085]
  • studies: EMF model refactoring and meta-model evolution...
  • PIKAIA

  • Referenced in 11 articles [sw04744]
  • observational data set. We have used this modeling tool in the context of white dwarf ... hitherto puzzling discrepancy between stellar evolution models and prior asteroseismic inferences of the surface helium...
  • PANTHER

  • Referenced in 15 articles [sw22973]
  • PANTHER in 2013: modeling the evolution of gene function, and other gene attributes ... relatively sparse experimental information from a few model organisms. Yet the focus of PANTHER ... designed to represent gene family evolution, including inference of evolutionary events, such as speciation...
  • GRI-Mech 3.0

  • Referenced in 66 articles [sw07056]
  • optimized mechanism designed to model natural gas combustion, including NO formation and reburn chemistry ... another step in the continuing updating evolution of the mechanism. The optimization process is designed ... kinetics which also furnish the best combined modeling predictability of basic combustion properties. Improvements were...
  • nuXmv

  • Referenced in 26 articles [sw18526]
  • systems. nuXmv is the evolution of the nuXmv open source model checker. It builds...
  • ISSM

  • Referenced in 13 articles [sw26213]
  • tackle the challenge of modeling the evolution of the polar ice caps in Greenland...
  • BIONJ

  • Referenced in 30 articles [sw08301]
  • latter case, for the model trees and the conditions of evolution tested, the topological error...
  • Vador

  • Referenced in 117 articles [sw06987]
  • oriented Resolution. The Vlasov equation describes the evolution of a system of particles under ... particles (electrons, ions,...) in phase space. This model can be used for the study...
  • Be-CoDiS

  • Referenced in 15 articles [sw15918]
  • temporal model, called Between-Countries Disease Spread (Be-CoDiS), to study the evolution of human ... mathematical formulation of each component of the model and explain how its parameters and inputs ... ability of the model in predicting the EVD evolution between countries starting from the index ... second one consists of forecasting the evolution of the epidemic by using some recent data...
  • Rose

  • Referenced in 8 articles [sw16613]
  • Rose implements a new probabilistic model of the evolution of RNA-, DNA-, or protein-like ... multiple sequence alignment is created simultaneously. The model also allows for varying rates of mutation ... teaching courses in or developing models of sequence evolution and in the study of evolutionary...
  • FastTree

  • Referenced in 8 articles [sw28979]
  • FastTree: Computing Large Minimum Evolution Trees with Profiles instead of a Distance Matrix. FastTree infers ... generalized time-reversible (GTR) models of nucleotide evolution and the JTT (Jones-Taylor-Thornton ... Gascuel 2008) models of amino acid evolution. To account for the varying rates of evolution...
  • tergm

  • Referenced in 7 articles [sw24886]
  • tergm: Fit, Simulate and Diagnose Models for Network Evolution Based on Exponential-Family Random Graph ... Models. An integrated set of extensions to the ’ergm’ package to analyze ... simulate network evolution based on exponential-family random graph models (ERGM). ’tergm’ is a part...