• GEMS

  • Referenced in 6 articles [sw36893]
  • expression data. The success of treatment of patients with cancer depends on establishing an accurate ... built a system called GEMS (gene expression model selector) for the automated development and evaluation...
  • ddepn

  • Referenced in 1 article [sw14723]
  • influence tumour development. Cancer cell lines can be used as model systems to study ... cellular response to drug treatments in a time-resolved way. Based on these kind...
  • SiMRX

  • Referenced in 1 article [sw26591]
  • promising results in medical applications, e.g. cancer treatment. Its basic principles were outlined in [Baumgarten ... transferred into a rigorous mathematical model and analyzed in [Föcke et al., 2018]. SiMRX...
  • Ferris

  • Referenced in 1 article [sw05079]
  • including links to the GAMS and AMPL modeling languages, and general purpose software such ... both optimization and complementarity, including cancer treatment plan development, radiation therapy, video-on-demand data...
  • PhysiCell

  • Referenced in 7 articles [sw30634]
  • signaling factors. It includes biologically-driven sub-models for cell cycling, apoptosis, necrosis, solid ... delivery” system, with application to anti-cancer treatments), cancer heterogeneity, and cancer immunology. PhysiCell...
  • iTTCA-Hybrid

  • Referenced in 1 article [sw40047]
  • venue for treatment by harnessing the body’s immune system to combat cancer. Therefore ... highly desirable to attain highly accurate models in a timely fashion from large volumes...
  • BGRMI

  • Referenced in 2 articles [sw29320]
  • heuristic search strategy to scan the model space efficiently. Using benchmark datasets, we show that ... regulatory networks of proliferating and differentiating breast cancer (BC) cells from time-course gene expression ... have clinical relevance in BC treatment...
  • ACPred

  • Referenced in 1 article [sw40012]
  • class of therapeutic agent for cancer treatment due to their lower toxicity as well ... develop and improve upon existing computational models for predicting and characterizing ACPs. In this study ... developed by utilizing powerful machine learning models (support vector machine and random forest) and various ... which correlates with its ability to kill cancer cells. Finally, for the convenience of experimental...
  • TargetAntiAngio

  • Referenced in 1 article [sw40014]
  • promising therapeutic route for cancer treatment. Thus, reliably identifying anti-angiogenic peptides is extremely important ... anti-cancer drugs. This study aims to develop an efficient and interpretable computational model called...
  • BayCount

  • Referenced in 2 articles [sw26925]
  • therefore critical for precise cancer prognosis and treatment. In this paper we introduce BayCount ... BayCount to The Cancer Genome Atlas lung cancer and kidney cancer RNA sequencing count data ... insights. The R package BayCount implementing our model and algorithm is available for download...
  • partDSA

  • Referenced in 2 articles [sw07441]
  • given event is essential in making informed treatment decisions. One approach is to stratify patients ... continuous in nature; important examples in cancer studies might include level of toxicity or time ... uncensored counterparts provided that the corresponding censoring model is correctly specified. The relative performance...
  • PLNseq

  • Referenced in 1 article [sw36868]
  • taken from the same subject under multiple treatment conditions. The induced correlation therefore should ... distribution to model matched read count data. The correlation is directly modeled through Gaussian random ... analysis. Application to a lung cancer study is provided to illustrate the practical utilities...
  • ADOL-C

  • Referenced in 247 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • GAUSS

  • Referenced in 119 articles [sw00322]
  • The GAUSS Mathematical and Statistical System is a...
  • LANCELOT

  • Referenced in 304 articles [sw00500]
  • LANCELOT. A Fortran package for large-scale nonlinear...
  • Maple

  • Referenced in 5296 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 421 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Mathematica

  • Referenced in 6235 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13100 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9188 articles [sw00771]
  • R is a language and environment for statistical...