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  • METRADE
  • Referenced in 1 article [sw28181]
  • Predictive analytics of environmental adaptability in multi-omic network models. Bacterial phenotypic traits and lifestyles ... over time, we develop a multi-omic model of Escherichia coli that accounts for metabolism ... translation levels. After the integration of multiple omics into the model, we propose a multiobjective ... analysis as estimators of short term multi-omic (transcriptomic and metabolic) evolution, thus enabling comparative...

  • MoNeRe
  • Referenced in 1 article [sw28180]
  • Multi-omic Network Regression: Methodology, Tool and Case Study. The analysis of biological networks ... computed states of a multi-omic (for instance metabolic, transcriptomic and proteomic) model. In this...

  • Omics Pipe
  • Referenced in 1 article [sw26801]
  • computational framework that automates multi-omics data analysis pipelines on high performance compute clusters...

  • Multiview
  • Referenced in 1 article [sw39394]
  • bioinformatics, often under the label multi-omics. Multiview data are gathered from several experiments, measurements...

  • DriverFinder
  • Referenced in 1 article [sw34273]
  • identify cancer driver genes. Integration of multi-omics data of cancer can help people...

  • solvebio
  • Referenced in 0 articles [sw17522]
  • collect and harmonize the complex, disparate ”multi-omic” data essential for today...

  • R
  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...

  • Graphviz
  • Referenced in 90 articles [sw01283]
  • Graphviz is open source graph visualization software. Graph...

  • STAR
  • Referenced in 14 articles [sw02515]
  • STAR: ultrafast universal RNA-seq aligner. Motivation: Accurate...

  • Bioconductor
  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • CRAN
  • Referenced in 552 articles [sw04351]
  • R is ‘GNU S’, a freely available language...

  • gplots
  • Referenced in 7 articles [sw04555]
  • gplots: Various R Programming Tools for Plotting Data...

  • ggplot2
  • Referenced in 365 articles [sw04557]
  • R package ggplot2: An implementation of the Grammar...

  • FactoMineR
  • Referenced in 48 articles [sw04573]
  • R package FactoMineR: Multivariate Exploratory Data Analysis and...

  • PLINK
  • Referenced in 66 articles [sw04581]
  • PLINK is a free, open-source whole genome...

  • gcrma
  • Referenced in 97 articles [sw06104]
  • Bioconductor/R package gcrma: Background Adjustment Using Sequence Information...

  • edgeR
  • Referenced in 53 articles [sw06936]
  • edgeR: a Bioconductor package for differential expression analysis...

  • igraph
  • Referenced in 209 articles [sw07066]
  • igraph is a software package for complex network...

  • WGCNA
  • Referenced in 26 articles [sw07123]
  • R package WGCNA: Weighted Correlation Network Analysis. Functions...