• MULTICOM

  • Referenced in 2 articles [sw15827]
  • accessibility prediction, disorder region prediction, protein domain boundary prediction, protein contact map prediction, protein disulfide ... beta-sheet structure prediction, protein fold recognition, multiple template combination, template-based structure modeling, protein...
  • MrTADFinder

  • Referenced in 2 articles [sw34259]
  • well as the distance dependence of the contact frequency for any pair of bins exhibited ... scales, hence the acronym ”Mr” standing for Multiple Resolutions. We then apply MrTADFinder to various ... enrichment of HOT (high-occupancy target) regions near TAD boundaries and investigate the role ... multi-scale structures in Hi-C contact maps...
  • BEMLIB

  • Referenced in 108 articles [sw00005]
  • BEMLIB is a boundary-element software library of...
  • ADOL-C

  • Referenced in 249 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • ANSYS

  • Referenced in 704 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ARVO

  • Referenced in 14 articles [sw00049]
  • ARVO: A Fortran package for computing the solvent...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • Gmsh

  • Referenced in 767 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • HSL

  • Referenced in 279 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • LANCELOT

  • Referenced in 306 articles [sw00500]
  • LANCELOT. A Fortran package for large-scale nonlinear...
  • LAPACK

  • Referenced in 1702 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5373 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 443 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • NAG

  • Referenced in 423 articles [sw00610]
  • Produced by experts for use in a variety...
  • NITSOL

  • Referenced in 99 articles [sw00623]
  • We introduce a well-developed Newton iterative (truncated...
  • Octave

  • Referenced in 304 articles [sw00646]
  • GNU Octave is a high-level language, primarily...
  • PARDISO

  • Referenced in 287 articles [sw00679]
  • The package PARDISO is a thread-safe, high...