• impute

  • Referenced in 104 articles [sw14376]
  • expression microarray experiments can generate data sets with multiple missing expression values. Unfortunately, many algorithms ... means clustering are not robust to missing data, and may lose effectiveness even with ... missing data are needed, therefore, to minimize the effect of incomplete data sets on analyses...
  • t-SNE

  • Referenced in 177 articles [sw22300]
  • seen from multiple viewpoints. For visualizing the structure of very large data sets, we show...
  • LAPACK

  • Referenced in 1713 articles [sw00503]
  • machines, thereby spending too much time moving data instead of doing useful floating-point operations ... block matrix operations, such as matrix multiplication, in the innermost loops. These block operations ... exploit the Level 3 BLAS — a set of specifications for Fortran subprograms that do various...
  • Spark

  • Referenced in 41 articles [sw23653]
  • those that reuse a working set of data across multiple parallel operations. This includes many ... only collection of objects partitioned across a set of machines that can be rebuilt...
  • JIVE

  • Referenced in 22 articles [sw09511]
  • multiple data types. Research in several fields now requires the analysis of data sets ... which multiple high-dimensional types of data are available for a common set of objects...
  • AFNI

  • Referenced in 26 articles [sw09076]
  • types of statistical analyses of multiple 3D functional data sets. The programs are written...
  • INLA

  • Referenced in 48 articles [sw07535]
  • large rainforest data set with covariates and a point pattern with multiple marks...
  • KLAIM

  • Referenced in 72 articles [sw09424]
  • supports a programming paradigm where processes, like data, can be moved from one computing environment ... core Linda with multiple tuple spaces and of a set of operators for building processes ... with explicit localities. Localities are first-class data (they can be manipulated like any other...
  • gplots

  • Referenced in 8 articles [sw04555]
  • Open-Office style plots (’ooplot’), - plotting multiple data sets on same region, with separate axes...
  • SHOGUN

  • Referenced in 104 articles [sw03517]
  • broad range of feature types and learning settings. It offers a considerable number of machine ... support vector machines, hidden Markov models, multiple kernel learning, linear discriminant analysis, and more. Most ... able to deal with several different data classes. We have used this toolbox in several...
  • RestoreTools

  • Referenced in 71 articles [sw04822]
  • restoration methods, implementation of efficient matrix vector multiplication, and linear system solves for preconditioners ... often require implementing different data structures and algorithms. A complex set of computational methods...
  • INMEX

  • Referenced in 4 articles [sw26782]
  • condition. Properly combining or integrating these data sets with similar basic hypotheses can help reduce ... data management and the complexities of analytical approaches have significantly limited data integration to enable ... support meta-analysis of multiple gene-expression data sets, as well as to enable integration ... analysis module allows researchers to combine multiple data sets based on P-values, effect sizes...
  • CMAR

  • Referenced in 53 articles [sw28406]
  • CMAR: accurate and efficient classification based on multiple class-association rules. Previous studies propose that ... handling unstructured data. However, it still suffers from the huge set of mined rules ... classification method, CMAR, i.e., Classification based on Multiple Association Rules. The method extends an efficient...
  • PAGE

  • Referenced in 7 articles [sw23828]
  • aged muscle microarray data sets at gene set level using PAGE revealed common biological themes ... identify significantly changed biological themes from microarray data irrespective of analysis methods or microarray platforms ... useful in comparison of multiple microarray data sets. We offer PAGE as a useful microarray...
  • JCI

  • Referenced in 4 articles [sw35495]
  • novel approach to causal discovery from multiple data sets from different contexts that elegantly unifies...
  • MixGHD

  • Referenced in 14 articles [sw18474]
  • analyzers for high dimensional data sets. The ’MSGHD’, mixture of multiple scaled generalized hyperbolic distributions...
  • tidyverse

  • Referenced in 38 articles [sw19358]
  • set of packages that work in harmony because they share common data representations ... make it easy to install and load multiple ’tidyverse’ packages in a single step. Learn...
  • SNOBFIT

  • Referenced in 25 articles [sw05289]
  • possible to use SNOBFIT with new data entered by hand, or by any automatic ... applications to the selection of continuous parameter settings for simulations or experiments, performed with ... optimizing some user-specified criterion. Since multiple data points can be entered, SNOBFIT can take...
  • T-coffee

  • Referenced in 41 articles [sw13195]
  • based on the popular progressive approach to multiple alignment but avoids the most serious pitfalls ... Coffee we pre-process a data set of all pair-wise alignments between the sequences...
  • MUSCLE

  • Referenced in 75 articles [sw13193]
  • MUSCLE, a new computer program for creating multiple alignments of protein sequences. Elements ... Coffee, MAFFT and CLUSTALW on four test sets of reference alignments: BAliBASE, SABmark, SMART ... rank in accuracy on each of these sets. Without refinement, MUSCLE achieves average accuracy statistically ... MUSCLE program, source code and PREFAB test data are freely available at http://www.drive5. com/muscle...