• HOPDM

  • Referenced in 74 articles [sw04342]
  • HOPDM is a package for solving large scale linear, convex quadratic and convex nonlinear programming ... infeasible primal-dual interior point method. It uses multiple centrality correctors; their number is chosen...
  • DeepLab

  • Referenced in 38 articles [sw15303]
  • multiple scales. Third, we improve the localization of object boundaries by combining methods from DCNNs...
  • ORIOGEN

  • Referenced in 16 articles [sw07654]
  • large scale multiple testing It is a common practice to use resampling methods such ... each test when performing large scale multiple testing. The precision of the bootstrap p-values ... simple adaptive bootstrap methodology for large scale multiple testing, which reduces the total number ... used 1,000 bootstraps, then the proposed method required only 160 bootstraps. This methodology...
  • homals

  • Referenced in 17 articles [sw13953]
  • package homals: Gifi Methods for Optimal Scaling. Performs a homogeneity analysis (multiple correspondence analysis...
  • DeconvNet

  • Referenced in 13 articles [sw36333]
  • segmentation method typically identifies detailed structures and handles objects in multiple scales naturally. Our network ... achieve the best accuracy (72.5%) among the methods trained with no external data through ensemble...
  • LSTRS

  • Referenced in 32 articles [sw04729]
  • quadratic problems with one norm constraint. The method is based on a reformulation ... parameter requires the solution of a large-scale eigenvalue problem at each step. LSTRS relies ... features that make it suitable for large-scale computations. In the MATLAB implementation, the Hessian ... vector multiplication routine. Therefore, the implementation preserves the matrix-free nature of the method...
  • MCF

  • Referenced in 27 articles [sw05167]
  • multi-commodity flow formulation of the multiple-depot vehicle scheduling problems arising in public mass ... approach and give computational results for large-scale test data (with up to 70 million ... basic ingredients of an effective method to solve multiple-depot vehicle scheduling problems to proven...
  • iLoc-Hum

  • Referenced in 36 articles [sw22433]
  • label scale to predict subcellular locations of human proteins with both single and multiple sites ... subcellular location sites. Most of the existing methods were established on the assumption: a protein ... increasing number of human proteins having multiple subcellular locations. This kind of multiplex proteins should ... attention. Based on the accumulation-label scale, a new predictor, called iLoc-Hum, was developed...
  • LIPSOL

  • Referenced in 84 articles [sw04712]
  • solving linear programs by interior-Point methods. It requires Matlab version 4.0 or later ... Barry Peyton at ORNL and a multiple minimum-degree ordering package by Joseph ... adequate speed for solving moderately large-scale problems even in the presence of overhead induced...
  • SSD

  • Referenced in 31 articles [sw26652]
  • Single Shot MultiBox Detector. We present a method for detecting objects in images using ... default boxes over different aspect ratios and scales per feature map location. At prediction time ... shape. Additionally, the network combines predictions from multiple feature maps with different resolutions to naturally ... model is simple relative to methods that require object proposals because it completely eliminates proposal...
  • ABLE

  • Referenced in 33 articles [sw12726]
  • large-scale non-Hermitian Eigenvalue problems (henceforth the ABLE method). The ABLE method ... adapts the blocksize to the order of multiple or clustered eigenvalues. Second, stopping criteria...
  • RSS

  • Referenced in 2 articles [sw23316]
  • genome-wide association studies. Bayesian methods for large-scale multiple regression provide attractive approaches ... yield new biological insights. However, these methods require access to individual genotypes and phenotypes, which...
  • SIMSON

  • Referenced in 43 articles [sw13385]
  • different subgrid-scale models are available. The evolution of multiple passive scalars can also ... performed using a third order Runge-Kutta method for the advective and forcing terms...
  • calm

  • Referenced in 2 articles [sw31098]
  • package calm: Covariate Assisted Large-scale Multiple testing. Statistical methods for multiple testing with covariate...
  • AmgX

  • Referenced in 14 articles [sw13440]
  • combined with any of the available multigrid methods or simpler preconditioners. The parallelism ... both setup and solve phases scale well across multiple nodes, sustaining this performance advantage...
  • LOCA

  • Referenced in 33 articles [sw04717]
  • library for performing bifurcation analysis of large-scale applications. The source code has been available ... drive application codes that use Newton’s method to locate steady-state solutions to nonlinear ... equations that describe the bifurcation. A Newton method is then formulated for this augmented system ... Almost all of the algorithms just require multiple solves of the Jacobian matrix...
  • MISHIMA

  • Referenced in 2 articles [sw35227]
  • method for high speed multiple alignment of nucleotide sequences of bacterial genome scale data. Background ... multiple sequence alignment methods. Conventional multiple alignment methods are based on pairwise alignment and/or progressive ... with genome scale sequences. Results: We present a new method of multiple sequence alignment, called...
  • iLoc-Virus

  • Referenced in 31 articles [sw22417]
  • both single- and multiple-location proteins. Also, among the existing methods, very few were developed ... this paper, by introducing the ”multi-label scale” and by hybridizing the gene ontology information...
  • Mauve

  • Referenced in 16 articles [sw24606]
  • multiple alignment of conserved genomic sequence with rearrangements. As genomes evolve, they undergo large-scale ... shuffled among genomes. We present methods for identification and alignment of conserved genomic...
  • XGobi

  • Referenced in 37 articles [sw11752]
  • state-of-the-art interactive and dynamic methods for the manipulation of views of data ... accommodated and their patterns can be examined; multiple imputations can be given to XGobi ... View™, and the interactive multidimensional scaling program XGvis. XGobi is implemented in the X Window...