• PLNseq

  • Referenced in 1 article [sw36868]
  • multivariate Poisson lognormal distribution for high-throughput matched RNA-sequencing read count data. High-throughput ... many experimental settings, RNA-seq read counts are measured from matched samples or taken from ... which uses a multivariate Poisson lognormal distribution to model matched read count data. The correlation...
  • xtnbreg

  • Referenced in 1 article [sw37522]
  • binomial distribution and its multivariate generalization, the Dirichlet-multinomial distribution. This approach involves no additional ... existing Stata command used for overdispersed count panel data. Including covariates to allow for regression...
  • MyriMatch

  • Referenced in 3 articles [sw31817]
  • matches that is based upon the multivariate hypergeometric distribution. This scorer, part of the ”MyriMatch ... limitations for existing database search scorers that count matched peaks without differentiating them by intensity...
  • StatAid

  • Referenced in 1 article [sw35922]
  • features such as: Exploratory data analysis: distribution, count, missing-values and outliers check; Descriptive analysis ... outcome: Kaplan-Meier curves and cox regression; Multivariate analysis and models for continuous, categorical...
  • DRIMSeq

  • Referenced in 1 article [sw25781]
  • DRIMSeq: a Dirichlet-multinomial framework for multivariate count outcomes in genomics. There are many instances ... analyses where measurements are made on a multivariate response. For example, alternative splicing can lead ... statistical framework based on the Dirichlet-multinomial distribution that can discover changes in isoform usage...
  • cdd

  • Referenced in 115 articles [sw00114]
  • The program cdd+ (cdd, respectively) is a C...
  • CoCoA

  • Referenced in 654 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...
  • Coq

  • Referenced in 1880 articles [sw00161]
  • Coq is a formal proof management system. It...
  • GAUSS

  • Referenced in 119 articles [sw00322]
  • The GAUSS Mathematical and Statistical System is a...
  • HOM4PS

  • Referenced in 81 articles [sw00410]
  • HOM4PS-2.0: a software package for solving polynomial...
  • Isabelle

  • Referenced in 698 articles [sw00454]
  • Isabelle is a generic proof assistant. It allows...
  • LAPACK

  • Referenced in 1695 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • LSQR

  • Referenced in 394 articles [sw00530]
  • Algorithm 583: LSQR: Sparse Linear Equations and Least...
  • Macaulay2

  • Referenced in 1904 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • Magma

  • Referenced in 3296 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...
  • Maple

  • Referenced in 5363 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6337 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13460 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • mclust

  • Referenced in 304 articles [sw00563]
  • R package mclust: Normal Mixture Modeling for Model...