
PLNseq
 Referenced in 1 article
[sw36868]
 multivariate Poisson lognormal distribution for highthroughput matched RNAsequencing read count data. Highthroughput ... many experimental settings, RNAseq read counts are measured from matched samples or taken from ... which uses a multivariate Poisson lognormal distribution to model matched read count data. The correlation...

xtnbreg
 Referenced in 1 article
[sw37522]
 binomial distribution and its multivariate generalization, the Dirichletmultinomial distribution. This approach involves no additional ... existing Stata command used for overdispersed count panel data. Including covariates to allow for regression...

MyriMatch
 Referenced in 3 articles
[sw31817]
 matches that is based upon the multivariate hypergeometric distribution. This scorer, part of the ”MyriMatch ... limitations for existing database search scorers that count matched peaks without differentiating them by intensity...

StatAid
 Referenced in 1 article
[sw35922]
 features such as: Exploratory data analysis: distribution, count, missingvalues and outliers check; Descriptive analysis ... outcome: KaplanMeier curves and cox regression; Multivariate analysis and models for continuous, categorical...

DRIMSeq
 Referenced in 1 article
[sw25781]
 DRIMSeq: a Dirichletmultinomial framework for multivariate count outcomes in genomics. There are many instances ... analyses where measurements are made on a multivariate response. For example, alternative splicing can lead ... statistical framework based on the Dirichletmultinomial distribution that can discover changes in isoform usage...

cdd
 Referenced in 115 articles
[sw00114]
 The program cdd+ (cdd, respectively) is a C...

CoCoA
 Referenced in 654 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...

compositions
 Referenced in 24 articles
[sw00150]
 R package compositions:Compositional data analysis with R...

Coq
 Referenced in 1880 articles
[sw00161]
 Coq is a formal proof management system. It...

GAUSS
 Referenced in 119 articles
[sw00322]
 The GAUSS Mathematical and Statistical System is a...

HOM4PS
 Referenced in 81 articles
[sw00410]
 HOM4PS2.0: a software package for solving polynomial...

Isabelle
 Referenced in 698 articles
[sw00454]
 Isabelle is a generic proof assistant. It allows...

LAPACK
 Referenced in 1695 articles
[sw00503]
 LAPACK is written in Fortran 90 and provides...

LSQR
 Referenced in 394 articles
[sw00530]
 Algorithm 583: LSQR: Sparse Linear Equations and Least...

Macaulay2
 Referenced in 1904 articles
[sw00537]
 Macaulay2 is a software system devoted to supporting...

Magma
 Referenced in 3296 articles
[sw00540]
 Computer algebra system (CAS). Magma is a large...

Maple
 Referenced in 5363 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 6337 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 13460 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

mclust
 Referenced in 304 articles
[sw00563]
 R package mclust: Normal Mixture Modeling for Model...