
signeR
 Referenced in 1 article
[sw41478]
 package signeR: Empirical Bayesian approach to mutational signature discovery. The signeR package provides an empirical ... Bayesian approach to mutational signature discovery. It is designed to analyze single nucleotide variaton...

mCSM
 Referenced in 2 articles
[sw16882]
 mutations in proteins using graphbased signatures. Motivation: Mutations play fundamental roles in evolution ... study of missense mutations, called mCSM, which relies on graphbased signatures. These encode distance ... predictive models. To understand the roles of mutations in disease, we have evaluated their impacts ... signatures were successfully used in different tasks demonstrating that the impact of a mutation...

SomaticSignatures
 Referenced in 1 article
[sw36881]
 Somatic Signatures  The SomaticSignatures package identifies mutational signatures of single nucleotide variants (SNVs). It provides...

MrTADFinder
 Referenced in 2 articles
[sw34259]
 different length scales, we observe that boundary signatures change with resolution, with different chromatin features ... between TADs and epigenetic marks, as tumor mutational burden is known to be coupled...

MARD
 Referenced in 0 articles
[sw21509]
 such technique is metamorphism encoding that mutates the dynamic binary code and changes the opcode ... realtime and generally requires a behavioral signature for detection. In this paper we present...

Magma
 Referenced in 3296 articles
[sw00540]
 Computer algebra system (CAS). Magma is a large...

Maple
 Referenced in 5363 articles
[sw00545]
 The result of over 30 years of cutting...

Mathematica
 Referenced in 6337 articles
[sw00554]
 Almost any workflow involves computing results, and that...

Matlab
 Referenced in 13460 articles
[sw00558]
 MATLAB® is a highlevel language and interactive...

R
 Referenced in 9810 articles
[sw00771]
 R is a language and environment for statistical...

CUDA
 Referenced in 1317 articles
[sw03258]
 The NVIDIA® CUDA® Toolkit provides a comprehensive development...

UCIml
 Referenced in 3379 articles
[sw04074]
 UC Irvine Machine Learning Repository. We currently maintain...

survival
 Referenced in 196 articles
[sw04364]
 R package survival: Survival analysis, including penalised likelihood...

DLMF
 Referenced in 2808 articles
[sw04968]
 NIST digital library of mathematical functions. The National...

GAMS
 Referenced in 865 articles
[sw04978]
 The General Algebraic Modeling System (GAMS) is specifically...

GAUSSIAN
 Referenced in 194 articles
[sw06118]
 Gaussian is an electronic structure program, used by...

NumPy
 Referenced in 537 articles
[sw06294]
 NumPy is the fundamental package for scientific computing...

SnapPy
 Referenced in 138 articles
[sw06874]
 SnapPy is a program for studying the topology...

OEIS
 Referenced in 4187 articles
[sw07248]
 The OnLine Encyclopedia of Integer Sequence. The...

LMFDB
 Referenced in 158 articles
[sw07249]
 Welcome to the LMFDB, the database of L...