• ARACNE

  • Referenced in 36 articles [sw17200]
  • network deconvolution problems. This method uses an information theoretic approach to eliminate the majority ... study the effects of misestimation of mutual information on network reconstruction, and show that algorithms ... based on mutual information ranking are more resilient to estimation errors. Conclusion: ARACNE shows promise...
  • REVEAL

  • Referenced in 28 articles [sw36999]
  • gene expression. By systematically analyzing the mutual information between input states and output states...
  • SUN

  • Referenced in 13 articles [sw28156]
  • saliency) emerges as the pointwise mutual information between the features and the target when searching...
  • minet

  • Referenced in 7 articles [sw08432]
  • Inferring Large Transcriptional Networks Using Mutual Information. Results: This paper presents the R/Bioconductor package minet ... functions to infer mutual information networks from a dataset. Once fed with a microarray dataset...
  • JIDT

  • Referenced in 9 articles [sw23550]
  • principally for the measures transfer entropy, mutual information, and their conditional variants, as well...
  • PSICOV

  • Referenced in 5 articles [sw17010]
  • information-theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions ... better than the best performing normalized mutual information approach and Bayesian networks...
  • NARROMI

  • Referenced in 6 articles [sw24066]
  • optimization (RO) and information theory-based mutual information (MI). In the proposed algorithm, the noisy...
  • ARACNe-AP

  • Referenced in 3 articles [sw34267]
  • engineering through adaptive partitioning inference of mutual information. The accurate reconstruction of gene regulatory networks ... Partitioning strategy (AP) for estimating the Mutual Information. The new AP implementation (ARACNe-AP) achieves ... previous methodology, while preserving the Mutual Information estimator and the Network inference accuracy...
  • ITE

  • Referenced in 5 articles [sw12811]
  • Information theoretical estimators toolbox. We present ITE (information theoretical estimators) a free and open source ... estimating many different variants of entropy, mutual information, divergence, association measures, cross quantities, and kernels...
  • IDTxl

  • Referenced in 4 articles [sw25603]
  • dynamics from multivariate time series data using information theory. IDTxl provides functionality to estimate ... entropy (TE)/Granger causality (GC), multivariate mutual information (MI), bivariate TE/GC, bivariate...
  • NESToolbox

  • Referenced in 4 articles [sw19592]
  • nonlinear Gaussian-kernel-based mutual information [2] or the Event Synchronization function [3] available under...
  • npeet

  • Referenced in 2 articles [sw14336]
  • functions for both discrete and continuous variables. Information theory provides a model-free way find ... installed. It includes estimators for entropy, mutual information, and conditional mutual information for both continuous ... Divergence estimator for continuous distributions and mutual information estimator between continuous and discrete variables along...
  • MIDER

  • Referenced in 2 articles [sw20089]
  • toolbox for network inference. MIDER (Mutual Information Distance and Entropy Reduction) is a general purpose ... using an entropic measure based on mutual information, which takes into account time delays ... between several definitions and normalizations of mutual information...
  • InfoGraph

  • Referenced in 2 articles [sw37754]
  • supervised Graph-Level Representation Learning via Mutual Information Maximization. This paper studies learning the representations ... graph-level representations. We maximize the mutual information between the graph-level representation ... semi-supervised scenarios. InfoGraph* maximizes the mutual information between unsupervised graph representations learned by InfoGraph...
  • CMfinder

  • Referenced in 6 articles [sw17265]
  • Bayesian framework that blends mutual information-based and folding energy-based approaches to predict structure...
  • GlobalMIT

  • Referenced in 2 articles [sw38463]
  • optimal dynamic bayesian network with the mutual information test criterion. Motivation: Dynamic Bayesian networks ... information theoretic-based scoring metric named mutual information test (MIT). With MIT, the task...
  • varrank

  • Referenced in 2 articles [sw23896]
  • package for variable ranking based on mutual information with applications to observed systemic datasets. This ... which perform variable ranking based on mutual information. The package is particularly suitable for exploring...
  • Tigramite

  • Referenced in 2 articles [sw19594]
  • partial correlation, standardized regression, and conditional mutual information with different estimators); Fast computation through ... shuffle test for conditional mutual information; Flexible plotting scripts for publication quality presentation of results...
  • InterMap3D

  • Referenced in 2 articles [sw35272]
  • methods: Row and Column Weighing of Mutual Information, Mutual Information/Entropy and Dependency. Finally, InterMap3D generates...
  • dit

  • Referenced in 3 articles [sw29392]
  • developed to quantify how quickly and reliably information could be transmitted across an arbitrary channel ... four reasonable multivariate generalizations of the mutual information, none of which inherit all the interpretations...