• Dedalus

  • Referenced in 21 articles [sw25607]
  • differential equations using spectral methods. It’s open-source, written in Python, and MPI-parallelized ... value, and eigenvalue problems involving nearly arbitrary equations sets. You build a spectrally-representable domain...
  • COUPLEX

  • Referenced in 32 articles [sw07861]
  • appearing in the COUPLEX benchmark are a set of simplified albeit realistic test cases aimed ... simplification of a typical 3D near-field computation, taking into account the glass dissolution ... results of the near-field computation (COUPLEX 2) to drive the behavior of the nuclide ... this last case was purposely left rather open, unlike the previous two, leaving the choice...
  • SIESTA

  • Referenced in 24 articles [sw05949]
  • from the use of strictly localized basis sets and from the implementation of linear-scaling ... some first-principles electronic-structure methods has opened up new opportunities in many disciplines ... Cond. Matt. 14, 2745 (2002)) has had nearly 3000 citations...
  • CloudBurst

  • Referenced in 6 articles [sw12025]
  • prohibitively time consuming, but CloudBurst uses the open-source Hadoop implementation of MapReduce to parallelize ... number of reads mapped, and with near linear speedup as the number of processors increases ... single core, while computing an identical set of alignments. Using a larger remote compute cloud ... human genome. Availability: CloudBurst is available open-source as a model for parallelizing algorithms with...
  • Open-ReID

  • Referenced in 1 article [sw30741]
  • Open Re-ID is a lightweight library of person re-identification for research purpose ... full set of models and evaluation metrics, as well as examples to reproduce (near) state ... results. Open-ReID is mainly based on PyTorch...
  • BUSCO

  • Referenced in 1 article [sw29505]
  • set, and transcriptome completeness, based on evolutionarily-informed expectations of gene content from near-universal ... OrthoDB v9. BUSCO assessments are implemented in open-source software, with a large selection ... lineage-specific sets of Benchmarking Universal Single-Copy Orthologs. These conserved orthologs are ideal candidates...
  • GeneMarkS

  • Referenced in 6 articles [sw23024]
  • starts is one of a few remaining open problems in computer prediction of prokaryotic genes ... coding regions and models of regulatory sites near gene start within an iterative Hidden Markov ... translation starts in an experimentally validated set of Escherichia coli genes. We have also observed ... detects prokaryotic genes, in terms of identifying open reading frames containing real genes, with...
  • TSIG_COMP

  • Referenced in 1 article [sw12501]
  • fine structure in near-rigid weakly-bonded open-shell complexes that consist of a diatomic ... transitions in semi-rigid planar weakly-bonded open-shell complexes. The complexes of interest contain ... proper effective Hamiltonian and molecular basis set...
  • JOGL

  • Referenced in 1 article [sw08151]
  • nearly all vendor extensions. It integrates with the AWT and Swing widget sets, as well ... part of a suite of open-source technologies initiated by the Game Technology Group...
  • 2LEDM

  • Referenced in 4 articles [sw09153]
  • violating phases in the MSSM are not nearly as tightly constrained by limits ... EDMs. We emphasize that a rich set of phenomenological consequences is potentially associated with these ... numerical study takes into account the complete set of contributions from one- and two-loop ... CPsuperH2.0 package. We also introduce an open-source numerical package, 2LEDM, which provides the complete...
  • POINCARe CODE

  • Referenced in 1 article [sw16802]
  • package of open-source implements for normalization and computer algebra reduction near equilibria of coupled ... differential equations. As a first version, a set of fourteen easy-to-use Maple commands...
  • KReator

  • Referenced in 3 articles [sw06946]
  • Bayes Nets and Markov Networks on relational settings. Only few developers provide prototypical implementations ... near future or can be implemented by researchers themselves as KReator is open-source...
  • SPAMS

  • Referenced in 1 article [sw02840]
  • pattern automaton can be smaller than the set of frequent sequential patterns ... approximate since we can provide near optimal results with a high probability. Experimental studies show ... SPAMS algorithm on various datasets. Our contribution opens a promising gateway, by using an automaton...
  • IPscatt

  • Referenced in 1 article [sw32724]
  • problem in scattering. IPscatt is a free, open-source MATLAB toolbox facilitating the solution ... harmonic scattering) in two- and three-dimensional settings. The toolbox has three main application cases ... toolbox allows the simulation of the scattered near field as well...
  • Path2PPI

  • Referenced in 0 articles [sw18919]
  • nearly none PPI are known. P ath2 PPI predicts PPI networks based on sets ... implementation : P ath2 PPI is an open-source tool implemented...
  • ADOL-C

  • Referenced in 249 articles [sw00019]
  • ADOL-C: Automatic Differentiation of C/C++. We present...
  • BoomerAMG

  • Referenced in 196 articles [sw00086]
  • BoomerAMG: A parallel algebraic multigrid solver and preconditioner...
  • CGAL

  • Referenced in 394 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • Expokit

  • Referenced in 200 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...