
DEseq
 Referenced in 59 articles
[sw10344]
 gene expression analysis based on the negative binomial distribution. Estimate variancemean dependence in count ... based on a model using the negative binomial distribution...

DESeq2
 Referenced in 27 articles
[sw41938]
 gene expression analysis based on the negative binomial distribution. Estimate variancemean dependence in count ... based on a model using the negative binomial distribution. Citation (from within R, enter citation...

BaySeq
 Referenced in 17 articles
[sw10343]
 sequencing samples. The method assumes a negative binomial distribution for the data and derives...

GWRM
 Referenced in 9 articles
[sw11197]
 count data based on the generalized Waring distribution is developed. This model allows the observed ... than a model based on the negative binomial distribution...

Segmentor3IsBack
 Referenced in 9 articles
[sw21077]
 adaptation of the algorithm to the negative binomial distribution with which we model the data...

BayesLogit
 Referenced in 44 articles
[sw09312]
 with binomial likelihoods. The approach appeals to a new class of PólyaGamma distributions, which ... method, including logistic regression, negative binomial regression, nonlinear mixedeffect models, and spatial models ... efficient sampler for the PólyaGamma distribution, are implemented in the R package BayesLogit. Supplementary...

glarma
 Referenced in 5 articles
[sw23274]
 past predictive residuals. Currently three distributions (Poisson, negative binomial and binomial) can be used...

tscount
 Referenced in 10 articles
[sw23277]
 allowed. The conditional distribution can be Poisson or Negative Binomial...

PePr
 Referenced in 2 articles
[sw34561]
 genome among biological samples with a negative binomial distribution and uses a local variance estimation...

DEXUS
 Referenced in 2 articles
[sw23833]
 counts as a finite mixture of negative binomial distributions in which each mixture component corresponds...

GENEcounter
 Referenced in 1 article
[sw20039]
 based on variations of the negative binomial distribution. The default method ... overparameterized version of the negative binomial distribution. GENEcounter also includes three different methods...

scModels
 Referenced in 1 article
[sw41031]
 discrete distribution models to count data. Included are the Poisson, the negative binomial, the Poisson ... implementation of the Poissonbeta distribution (density, distribution and quantile functions, and random number generator ... variants of each of the three aforementioned distributions are also available. The variants include ... paper ”A mechanistic model for the negative binomial distribution of singlecell mRNA counts...

countvar
 Referenced in 1 article
[sw38345]
 Poisson, Zero Inflated Generalized Possion and Negative Binomial Distribution...

spatcounts
 Referenced in 6 articles
[sw13743]
 dispersion, the negative Binomial as well as the zeroinflated Poisson distribution which allows...

AS 68
 Referenced in 1 article
[sw03801]
 estimating the parameters of the truncated negative binomial distribution...

NB.MClust
 Referenced in 1 article
[sw40210]
 negative data that follow Generalized Negative Binomial distribution. All functions in this package applies...

gsarima
 Referenced in 1 article
[sw24136]
 series with Normal / Gaussian, Poisson or negative binomial distribution...

zGPS.AO
 Referenced in 1 article
[sw36139]
 based on the zeroinflated negative binomial distribution. It estimates the association between a specific...

PUseqClust
 Referenced in 1 article
[sw31589]
 counts are popularly modeled by the negative binomial distribution to reduce the impact...

MITIE
 Referenced in 1 article
[sw34895]
 likelihood function based on the negative binomial distribution, use a regularization approach to select...