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  • pLoc-mGneg
  • Referenced in 23 articles [sw25190]
  • current study is focused on the Gram-negative bacterial proteins. Although considerable efforts have been ... This is because mounting evidences have indicated that many Gram-negative bacterial proteins exist...

  • YEASTRACT
  • Referenced in 2 articles [sw29375]
  • binding and expression evidence; (ii) considering only either positive or negative regulatory associations...

  • Signal-3L
  • Referenced in 16 articles [sw26857]
  • plant, animal, eukaryotic, Gram-positive, and Gram-negative protein sequences, respectively. The new predictor ... fusing many individual OET-KNN (optimized evidence-theoretic K nearest neighbor) classifiers operated in various...

  • ANOSVA
  • Referenced in 2 articles [sw35536]
  • generated no false positives and few false negatives. We demonstrated ANOSVA with data from ... tissues, yielding a set of genes with evidence of tissue-specific splice variation...

  • DEXUS
  • Referenced in 2 articles [sw23833]
  • read counts as a finite mixture of negative binomial distributions in which each mixture component ... noise and variation due to differential expression. Evidence of differential expression is measured...

  • Socrates
  • Referenced in 1 article [sw34368]
  • algorithms use one or more sources of evidence, such as read depth, paired-end reads ... burden and high false-positive or false-negative rates. Results: In this article, we present...

  • OUOUCIR
  • Referenced in 1 article [sw34465]
  • evolution, which prevents rates from becoming negative, is a potentially useful extension developed here ... several data sets from literature also provides evidence of the validity and utility...

  • G4Hunter
  • Referenced in 2 articles [sw27624]
  • quadruplex propensity with G4Hunter. Critical evidence for the biological relevance of G-quadruplexes ... these tools do form G4 structures (false negatives) and that other sequences predicted to form...

  • Coq
  • Referenced in 1890 articles [sw00161]
  • Coq is a formal proof management system. It...

  • GAP
  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...

  • Magma
  • Referenced in 3315 articles [sw00540]
  • Computer algebra system (CAS). Magma is a large...

  • Matlab
  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...

  • R
  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...

  • WordNet
  • Referenced in 411 articles [sw01777]
  • WordNet® is a large lexical database of English...

  • S-PLUS
  • Referenced in 615 articles [sw02892]
  • S-PLUS is a powerful environment for statistical...

  • OTTER
  • Referenced in 316 articles [sw02904]
  • Our current automated deduction system Otter is designed...

  • UCI-ml
  • Referenced in 3403 articles [sw04074]
  • UC Irvine Machine Learning Repository. We currently maintain...

  • CPLEX
  • Referenced in 2773 articles [sw04082]
  • IBM® ILOG® CPLEX® offers C, C++, Java, .NET...

  • Bioconductor
  • Referenced in 319 articles [sw04205]
  • Bioconductor provides tools for the analysis and comprehension...

  • CRAN
  • Referenced in 552 articles [sw04351]
  • R is ‘GNU S’, a freely available language...