• BIONJ

  • Referenced in 30 articles [sw08301]
  • propose an improved version of the neighbor-joining (NJ) algorithm of Saitou and Nei. This...
  • GRAPPA

  • Referenced in 12 articles [sw17255]
  • evolutionary distances, consistently beating the baseline Neighbor-Joining. Our new method enables us to extend...
  • T-REX

  • Referenced in 9 articles [sw20724]
  • bioinformatics applications such as MUSCLE, MAFFT, Neighbor Joining, NINJA, BioNJ, PhyML, RAxML, random phylogenetic tree...
  • FastMe

  • Referenced in 5 articles [sw28027]
  • which is the very principle of Neighbor Joining (NJ). FastME improves over NJ by performing ... first version of FastME only included Nearest Neighbor Interchange. The new 2.0 version also includes...
  • NINJA

  • Referenced in 5 articles [sw29620]
  • NINJA is software for large-scale neighbor-joining phylogeny inference. It expects inputs...
  • SEAVIEW

  • Referenced in 4 articles [sw22985]
  • building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum...
  • PHYLO_WIN

  • Referenced in 4 articles [sw22986]
  • building according to most usual methods (neighbor joining with numerous distance estimates, maximum parsimony, maximum...
  • PTreeRec

  • Referenced in 1 article [sw09656]
  • phylogenetic tree is reconstructed by the neighbor-joining method...
  • NTSYSpc

  • Referenced in 1 article [sw18411]
  • estimate a phylogenetic tree using the neighbor-joining or UPGMA methods for constructing dendrograms...
  • iSS-Hyb-mRMR

  • Referenced in 3 articles [sw22414]
  • protein diversity. Perfectly eradication of introns and joining exons is the prominent task in eukaryotic ... using various classification algorithms including K-nearest neighbor, probabilistic neural network, general regression neural network...
  • GAP

  • Referenced in 3189 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • LEDA

  • Referenced in 263 articles [sw00509]
  • In the core computer science areas -- data structures...
  • Maple

  • Referenced in 5373 articles [sw00545]
  • The result of over 30 years of cutting...
  • MapReduce

  • Referenced in 263 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • polymake

  • Referenced in 316 articles [sw00724]
  • polymake is open source software for research in...
  • TSPLIB

  • Referenced in 698 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • GraphBase

  • Referenced in 135 articles [sw01555]
  • The Stanford GraphBase is a freely available collection...
  • SNAP

  • Referenced in 171 articles [sw04184]
  • Stanford Network Analysis Platform (SNAP) is a general...