
igraph
 Referenced in 215 articles
[sw07066]
 software package for complex network analysis and graph theory, with an emphasis on efficiency, portability...

SNAP
 Referenced in 179 articles
[sw04184]
 Stanford Network Analysis Platform (SNAP) is a general purpose, high performance system for analysis...

Datalog
 Referenced in 293 articles
[sw20023]
 application in data integration, information extraction, networking, program analysis, security, and cloud computing...

DEA
 Referenced in 246 articles
[sw00194]
 p.38). Groups such as the Productivity Analysis Research Network (PARN ) and others have supported...

Pajek
 Referenced in 159 articles
[sw03707]
 Pajek  analysis and visualization of large networks. Pajek (spider, in Slovene) is a program package ... Windows (32 bit), for analysis and visualization of large networks (having thousands of vertices...

CRAN
 Referenced in 570 articles
[sw04351]
 nonlinear modelling, statistical tests, time series analysis, classification, clustering, etc. Please consult the R project ... homepage for further information. CRAN is a network of ftp and web servers around...

ergm
 Referenced in 71 articles
[sw06777]
 statnet” suite of packages for network analysis...

KONECT
 Referenced in 64 articles
[sw17480]
 science, network science and related areas, as well as provide tools for their analysis ... very heterogeneous data can be modeled as networks and consequently, a unified representation of networks ... Matlab toolbox for network analysis and (3) a website giving a compact overview the various ... paper, we describe KONECT’s taxonomy of networks datasets, give an overview of the datasets...

Brain Connectivity Toolbox
 Referenced in 94 articles
[sw26516]
 MATLAB toolbox for complexnetwork (graph) analysis of structural and functional brainconnectivity data sets...

statnet
 Referenced in 66 articles
[sw07328]
 statnet: Software tools for the Statistical Analysis of Network Data. An integrated set of tools ... representation, visualization, analysis, and simulation of network data. For an introduction, type help(package=’statnet...

BioPEPA
 Referenced in 108 articles
[sw01361]
 modelling and the analysis of biochemical networks. It is a modiﬁcation of PEPA, originally deﬁned ... biological systems, on which different kindsof analysis can be carried out. BioPEPA is enriched...

LPbook
 Referenced in 51 articles
[sw31782]
 linear programming, and proceeding to convex analysis, network flows, integer programming, quadratic programming, and convex...

Manopt
 Referenced in 125 articles
[sw08493]
 completion, sensor network localization, camera network registration, independent component analysis, metric learning, dimensionality reduction...

COPASI
 Referenced in 71 articles
[sw12253]
 software application for simulation and analysis of biochemical networks and their dynamics. COPASI...

WGCNA
 Referenced in 26 articles
[sw07123]
 package WGCNA: Weighted Correlation Network Analysis. Functions necessary to perform Weighted Correlation Network Analysis...

Ucinet
 Referenced in 34 articles
[sw13100]
 Ucinet for Windows: Software for Social Network Analysis...

SANET
 Referenced in 31 articles
[sw14951]
 SANET toolbox: new methods for network spatial analysis. This paper describes new methods, called network ... commonly used computational methods to facilitate network spatial analysis. Fifth, the paper describes the functions ... based software package, called SANET, that perform network spatial methods. Sixth, the paper compares network...

sna
 Referenced in 23 articles
[sw07318]
 package sna: Tools for Social Network Analysis. A range of tools for social network analysis ... distance and covariance methods, structural equivalence detection, network regression, random graph generation, and 2D/3D network...

KronFit
 Referenced in 48 articles
[sw20428]
 modeling networks. How can we generate realistic networks? In addition ... tractable model that allows for rigorous analysis of network properties? Real networks exhibit a long...

Ginsim
 Referenced in 33 articles
[sw09090]
 qualitative modelling, simulation and analysis of regulatory networks. This paper presents GINsim, a Java software ... qualitative modelling, analysis and simulation of genetic regulatory networks. Formally, our approach leans on discrete ... preliminary model analysis of the intercellular regulatory network activating Notch at the dorsal–ventral...