• ANFIS

  • Referenced in 268 articles [sw08730]
  • system implemented in the framework of adaptive networks. By using a hybrid learning procedure ... series, all yielding remarkable results. Comparisons with artificial neural networks and earlier work on fuzzy...
  • PhyloNet

  • Referenced in 9 articles [sw20725]
  • trees, clusters, and tripartitions; (3) evolutionary network comparison: comparing two evolutionary networks in terms...
  • QNet

  • Referenced in 10 articles [sw13845]
  • proteins in seconds on current networks, and outperforms sequence-based searches. We also use QNet ... perform the first large scale cross-species comparison of protein complexes, by querying known yeast ... complexes against a fly protein interaction network. This comparison points to strong conservation between ... tool in mining protein interaction networks...
  • FACTORIE

  • Referenced in 13 articles [sw08947]
  • typed, functional language. In experimental comparisons to Markov Logic Networks on joint segmentation and coreference...
  • bnlearn

  • Referenced in 60 articles [sw08265]
  • learning algorithms for both discrete and Gaussian networks, along with many score functions and conditional ... also implemented. Some utility functions (model comparison and manipulation, random data generation, arc orientation testing...
  • Graemlin

  • Referenced in 5 articles [sw29736]
  • motivated research into network alignment: the cross-species comparison of conserved functional modules. Previous studies ... such comparisons and demonstrated their power on a select set of sparse interaction networks. Recently ... first quantitative benchmarks for network alignment, which allow comparisons of algorithms in terms of their...
  • FaceNet

  • Referenced in 16 articles [sw21626]
  • vectors. Our method uses a deep convolutional network trained to directly optimize the embedding itself ... system cuts the error rate in comparison to the best published result ... different networks) that are compatible to each other and allow for direct comparison between each...
  • GloMoSim

  • Referenced in 60 articles [sw13764]
  • composable: the communication protocol stack for wireless networks is divided into a set of layers ... these APIs. The modular implementation enables consistent comparison of multiple protocols at a given layer...
  • SANET

  • Referenced in 25 articles [sw14951]
  • network spatial methods. Sixth, the paper compares network spatial methods with the corresponding planar spatial ... methods to the same data set. This comparison clearly demonstrates how different conclusions can result...
  • netrd

  • Referenced in 1 article [sw35821]
  • compare the resulting networks. However, network comparison is also not an easy problem ... best to quantify the differences between two networks, in part because of the diversity ... both network reconstruction techniques and network comparison techniques (often referred to as graph distances ... already a widely used resource for network scientists and other multidisciplinary researchers. With ongoing open...
  • Kavosh

  • Referenced in 8 articles [sw29733]
  • size network motifs with less memory and CPU time in comparison to other existing algorithms ... undirected). We evaluated our algorithm on biological networks of E. coli and S. cereviciae ... biological networks: a social and an electronic network. Conclusion: The efficiency of our algorithm ... three well-known motif finding tools. For comparison, the CPU time, memory usage...
  • PcGets

  • Referenced in 43 articles [sw01937]
  • comparison of complementary automatic modeling methods: RETINA and PcGets. The authors [Oxford Bull. Econom. Stat ... tool called relevant transformation of the inputs network approach (RETINA). It is designed to embody...
  • AdaBoost.RT

  • Referenced in 14 articles [sw08520]
  • artificial neural networks, and a single M5 model tree. The preliminary empirical comparisons show higher...
  • SpectralNET

  • Referenced in 3 articles [sw26161]
  • have SpectralNET generate an idealized random network for comparison to a real-world dataset. Whichever...
  • TreeJuxtaposer

  • Referenced in 5 articles [sw18623]
  • application domains where tree comparison is needed, ranging from network management to call graph optimization...
  • SIRENE

  • Referenced in 7 articles [sw17419]
  • infer gene regulatory networks from gene expression data, a recent comparison on a large-scale ... propose SIRENE (Supervised Inference of Regulatory Networks), a new method for the inference of gene...
  • BioMiner

  • Referenced in 3 articles [sw23101]
  • called PathViewer for the visualization of metabolic networks is presented. PathViewer is the first application ... which supports the graphical comparison of metabolic networks of different organisms. AVAILABILITY: http://www.zbi.uni-saarland.de/chair/projects/BioMiner...
  • SSVM

  • Referenced in 60 articles [sw12678]
  • converges globally and quadratically. Numerical results and comparisons are given to demonstrate the effectiveness ... Musicant, IEEE Trans. Neural Networks 10, 1032-1037 (1999)] and SMO [J. Platt, in: Advances...
  • C-GRAAL

  • Referenced in 3 articles [sw08317]
  • expected that comparison and alignment of biological networks will have a similar impact ... biological function, and disease as did sequence comparison and alignment. Here, we introduce a novel ... number of aligned edges between two networks and is based solely on network topology...
  • GEDEVO

  • Referenced in 2 articles [sw08298]
  • kinds of biological entities. The emerging interaction networks are usually modeled as graphs with thousands ... addition to sequence alignment, the comparison of biological networks has proven great potential to infer ... proteins and genes. However, the corresponding network alignment problem is computationally hard and theoretically intractable ... efficient graph comparison dedicated to real-world size biological networks. Underlying our approach...