• PANACEA

  • Referenced in 16 articles [sw00673]
  • mixed queueing networks. Based on an underlying theory of integral representations and asymptotic expansions, PANACEA...
  • BioNet

  • Referenced in 5 articles [sw13828]
  • package provides an extensive framework for integrated network analysis using R and BioConductor. It includes ... statistics for the integration of transcriptomic and functional data with biological networks, the methods...
  • RRE

  • Referenced in 9 articles [sw22305]
  • recovery engine. Preserving the availability and integrity of networked computing systems in the face...
  • NETPAD

  • Referenced in 5 articles [sw02882]
  • network modeling; therefore, we have integrated network attributes and tables into the system. Third, algorithmic...
  • AIS-BN

  • Referenced in 25 articles [sw02223]
  • exact algorithms in very large Bayesian network models, have been observed to perform poorly ... finite-dimensional integrals and the structural advantages of Bayesian networks, (2) a smooth learning method...
  • DeconvNet

  • Referenced in 6 articles [sw36333]
  • existing methods based on fully convolutional networks by integrating deep deconvolution network and proposal-wise...
  • SPINE

  • Referenced in 5 articles [sw29309]
  • connect causal to affected genes on a network of physical interactions. Results: We present ... expression levels. To this end, an integrated network of protein–protein and protein-DNA interactions...
  • MI-GRAAL

  • Referenced in 3 articles [sw08318]
  • Integrative network alignment reveals large regions of global network similarity in yeast and human. Motivation ... introduce a novel network alignment algorithm, called Matching-based Integrative GRAph ALigner (MI-GRAAL), which ... integrate any number and type of similarity measures between network nodes (e.g. proteins), including...
  • efmtool

  • Referenced in 17 articles [sw35920]
  • metabolic networks. It is implemented in Java and has been integrated into MATLAB...
  • RTNI

  • Referenced in 3 articles [sw28081]
  • RTNI - A symbolic integrator for Haar-random tensor networks. We provide ... computer algebra package called Random Tensor Network Integrator (RTNI). It allows to compute averages...
  • MatConvNet

  • Referenced in 12 articles [sw15651]
  • implementation of Convolutional Neural Networks (CNNs) with a deep integration in the MATLAB environment...
  • visone

  • Referenced in 12 articles [sw12042]
  • visual exploration of social networks. Social network analysis is a methodological approach in the social ... attempt to integrate analysis and visualization of social networks and is intended to be used...
  • KNIME

  • Referenced in 22 articles [sw06790]
  • predictive analytics, visualisation and reporting. The open integration platform provides over 1000 modules (nodes), including ... KNIME community and its extensive partner network. KNIME can be downloaded onto the desktop ... shared repositories, authentication, remote execution, scheduling, SOA integration and a web user interface as well...
  • COBRApy

  • Referenced in 3 articles [sw16711]
  • used for genome-scale modeling of metabolic networks in both prokaryotes and eukaryotes ... apply COBRA methods to reconstruct and analyze integrated models of cellular processes. The COBRA Toolbox ... elegantly capture the complexity inherent in integrated biological networks and lacks an integration framework...
  • SEMINT

  • Referenced in 15 articles [sw00845]
  • database schemas. SEMantic INTegrator (SEMINT) is a tool based on neural networks to assist...
  • HIPPIE

  • Referenced in 5 articles [sw29288]
  • HIPPIE: Integrating Protein Interaction Networks with Experiment Based Quality Scores. Protein function is often modulated ... this goal, we generated HIPPIE (Human Integrated Protein-Protein Interaction rEference), a human PPI dataset ... with a normalized scoring scheme that integrates multiple experimental PPI datasets. HIPPIE’s scoring scheme ... cbdm.mdc-berlin.de/tools/hippie) allows researchers to do network analyses focused on likely true PPI sets...
  • Predict

  • Referenced in 4 articles [sw13569]
  • validation, and optimization to rapid integration of neural network models placed in service. NeuralWare standard...
  • NeC4.5

  • Referenced in 11 articles [sw20994]
  • network ensemble is with strong generalization ability. In this paper, these merits are integrated into...
  • C-ImmSim

  • Referenced in 5 articles [sw34210]
  • Implementation of a regulatory gene network to simulate the TH1/2 differentiation in an agent-based ... this work is to integrate a gene network of the TH differentiation in an agent...
  • SAP APO

  • Referenced in 22 articles [sw13389]
  • Optimization (SAP APO) provides a fully integrated range of functions that you require for planning ... measurement of the performance of the logistic network...