• RanGen

  • Referenced in 56 articles [sw14333]
  • parameters which are related to the network topology and resource-related parameters are implemented...
  • MPICH-G2

  • Referenced in 35 articles [sw02373]
  • collective operations, are configured to exploit network topology information. The library also exploits MPI constructs ... discovery of, and adaptation to, both network topology and network quality-of-service mechanisms...
  • ARACNE

  • Referenced in 38 articles [sw17200]
  • effect of loops in the network topology is negligible, and we show that the algorithm ... complex topologies. We assess ARACNE’s ability to reconstruct transcriptional regulatory networks using both...
  • BRITE

  • Referenced in 34 articles [sw03098]
  • Internet Topologies. Abstract BRITE is a parameterized topology generation tool, which can be used ... study various properties of generated network topologies (such power laws, path length and clustering coefficient ... causes for properties recently observed in Internet topologies. Different combinations of possible causes ... existing nodes; (2) incremental growth of the network; (3) geographical distribution of nodes...
  • APOGEE

  • Referenced in 35 articles [sw08451]
  • generalized pooling problem treating the network topology as a decision variable and an extended pooling...
  • SegNet

  • Referenced in 27 articles [sw27575]
  • layer. The architecture of the encoder network is topologically identical to the 13 convolutional layers...
  • Firmato

  • Referenced in 12 articles [sw10595]
  • security policy and of the network topology; (2) a model definition language, which...
  • NETWORKINFERENCE

  • Referenced in 7 articles [sw06744]
  • biologically realistic simulations with known network topology. Here, we seek to determine the degree ... which the network topology and data sampling regime influence the ability of our Bayesian network...
  • QuACN

  • Referenced in 8 articles [sw07971]
  • This package offers a set of topological network measures to analyze complex Networks structurally...
  • TopologyNet

  • Referenced in 7 articles [sw41013]
  • TopologyNet: Topology based deep convolutional neural networks for biomolecular property predictions. Although deep learning approaches ... geometric complexity and biological complexity. We introduce topology, i.e., element specific persistent homology (ESPH ... neural networks to construct a multichannel topological neural network (TopologyNet) for the predictions of protein ... sets, we present a multitask topological convolutional neural network (MT-TCNN). We demonstrate that...
  • VeriCon

  • Referenced in 5 articles [sw16297]
  • general, scaling these methods to large networks is challenging and, moreover, they cannot guarantee ... admissible topologies and for all possible (infinite) sequences of network events. VeriCon either confirms ... controller program on all admissible network topologies or outputs a concrete counterexample. VeriCon uses first ... order logic to specify admissible network topologies and desired network-wide invariants, and then implements...
  • RSNNS

  • Referenced in 6 articles [sw11829]
  • that the most common neural network topologies and learning algorithms integrate seamlessly into...
  • C-GRAAL

  • Referenced in 4 articles [sw08317]
  • networks and is based solely on network topology. As such, it can be applied ... networks, and we demonstrate that the resulting alignments expose large connected and functionally topologically aligned ... align human–pathogen inter-species PPI networks and that it can identify patterns of pathogen ... interactions with host proteins solely from network topology...
  • Graemlin

  • Referenced in 5 articles [sw29736]
  • schemes and the location of conserved network topologies other than protein complexes and metabolic pathways ... have developed the first quantitative benchmarks for network alignment, which allow comparisons of algorithms...
  • Chromium

  • Referenced in 5 articles [sw14150]
  • completely abstracting the underlying graphics architecture, network topology, and API command processing semantics, we allow...
  • DPillar

  • Referenced in 5 articles [sw14070]
  • server-centric data center network called DPillar, whose topology is inspired by the classic butterfly ... properties and achieves the balance between topological scalability, network performance, and cost efficiency, which make...
  • HubAlign

  • Referenced in 3 articles [sw34150]
  • HubAlign, that makes use of both network topology and sequence homology information, based upon ... observation that topologically important proteins in a PPI network usually are much more conserved ... minimum-degree heuristic algorithm to estimate the topological and functional importance ... protein from the global network topology information. Then HubAlign aligns topologically important proteins first...
  • BrainNet Viewer

  • Referenced in 12 articles [sw26512]
  • BrainNet Viewer: a network visualization tool for human brain connectomics. The human brain ... complex system whose topological organization can be represented using connectomics. Recent studies have shown that ... methods reveal the intriguing topological architectures of human brain networks in healthy populations and explore...
  • NS-3

  • Referenced in 4 articles [sw07496]
  • robust under different assumptions regarding network topology, routing strategy and packets injection distributions...
  • gNCA

  • Referenced in 4 articles [sw08821]
  • cannot incorporate information beyond the network topology such as information obtained from regulatory gene knockouts ... which significantly expands the capability of transcription network analysis by incorporating regulatory signal constraints arising...