• MFinder

  • Referenced in 2 articles [sw08095]
  • motifs are also found in signal transduction networks, neuronal networks and other biological...
  • NeuroStruct

  • Referenced in 1 article [sw36040]
  • image information from image stacks of individual neurons filled with biocytin and stained with osmium ... morphological characteristics and simulation signalling within a neuron that capture the influence of spines...
  • hebbRNN

  • Referenced in 1 article [sw29194]
  • synapses of individual neurons as well as instantaneous reward signals. The current package ... signal. On individual trials, input is perturbed randomly at the synapses of individual neurons ... each trial, a reward signal is determined based on the overall performance of the network...
  • Py-oopsi

  • Referenced in 1 article [sw27105]
  • widely used to extract neuron spike activities from calcium fluorescence signals. Here, we propose detailed...
  • Expression2Kinases

  • Referenced in 1 article [sw34967]
  • hippocampal neurons. The X2K approach can advance our understanding of cell signaling and unravel drugs...
  • HNCcorr

  • Referenced in 3 articles [sw19188]
  • method in neuroscience to investigate patterns of neuronal activity. Instrumentation to acquire calcium imaging movies ... algorithms to automatically detect and extract activity signals from calcium imaging movies are highly variable...
  • Suite2p

  • Referenced in 2 articles [sw19191]
  • complete pipeline from raw image data to neuronal calcium traces to inferred spike times ... spike times and a spatially smooth neuropil signal, and solve the inference and learning problems...
  • NSM

  • Referenced in 3 articles [sw25284]
  • Neural signal manager: a collection of classical and innovative tools for multi-channel spike train ... approaches for studying the dynamics of dissociated neuronal networks as well as acute/organotypic slices maintained ... software package, named the Neural Signal Manager (NSM), aimed at analyzing a huge quantity...
  • AlzPathway

  • Referenced in 1 article [sw29341]
  • available pathway map that comprehensively catalogs all signaling pathways in the field of Alzheimer ... thousands of molecules and reactions in neuron, brain blood barrier, presynaptic, postsynaptic, astrocyte, and microglial ... intra, inner and extra cellular AD signalings for deciphering pathogenesis...
  • CONN

  • Referenced in 2 articles [sw26510]
  • such as spurious correlations based on non-neuronal sources. We have developed a functional connectivity ... residual blood oxygen level-dependent (BOLD) contrast signal, first-level estimation of multiple standard functional...
  • ARfit

  • Referenced in 38 articles [sw00046]
  • ARfit is a collection of Matlab modules for...
  • HSL

  • Referenced in 274 articles [sw00418]
  • HSL (formerly the Harwell Subroutine Library) is a...
  • Maple

  • Referenced in 5220 articles [sw00545]
  • The result of over 30 years of cutting...
  • MATCONT

  • Referenced in 399 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Mathematica

  • Referenced in 6129 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 12721 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 8904 articles [sw00771]
  • R is a language and environment for statistical...
  • SUNDIALS

  • Referenced in 221 articles [sw00927]
  • SUNDIALS was implemented with the goal of providing...
  • TISEAN

  • Referenced in 162 articles [sw00967]
  • Practical implementation of nonlinear time series methods: The...
  • TSPLIB

  • Referenced in 678 articles [sw00983]
  • TSPLIB is a library of sample instances for...