• TxT

  • Referenced in 1 article [sw07679]
  • reconciliation of non-binary gene tree and binary species tree Tree reconciliation approach to inferring ... challenging problems when input gene and species trees are non-binary. We present the first ... non-binary gene tree and a binary species tree that minimizes the gene loss cost ... gene duplication cost. As a part of a method for reconciling two non-binary trees...
  • Mathematica

  • Referenced in 6075 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • R

  • Referenced in 8776 articles [sw00771]
  • R is a language and environment for statistical...
  • TSPLIB

  • Referenced in 674 articles [sw00983]
  • TSPLIB is a library of sample instances for...
  • ape

  • Referenced in 57 articles [sw04569]
  • R package ape: Analyses of Phylogenetics and Evolution...
  • Genocop

  • Referenced in 1083 articles [sw04707]
  • Genocop, by Zbigniew Michalewicz, is a genetic algorithm...
  • fastDNAml

  • Referenced in 91 articles [sw06651]
  • fastDNAml is a program for estimating maximum likelihood...
  • PHYLIP

  • Referenced in 100 articles [sw07694]
  • PHYLIP is a free package of programs for...
  • MrBayes

  • Referenced in 57 articles [sw07715]
  • MrBayes: Bayesian Inference of Phylogeny. MrBayes is a...
  • RAxML

  • Referenced in 38 articles [sw07716]
  • Parallel inference of a 10.000-taxon phylogeny with...
  • PAUP*

  • Referenced in 55 articles [sw07834]
  • PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0...
  • BIONJ

  • Referenced in 30 articles [sw08301]
  • BIONJ: an improved version of the NJ algorithm...
  • PhySIC

  • Referenced in 8 articles [sw08376]
  • PhySIC: A Veto Supertree Method with Desirable Properties...
  • Notung

  • Referenced in 12 articles [sw08917]
  • NOTUNG: A Program for Dating Gene Duplications and...
  • MEGA

  • Referenced in 34 articles [sw09078]
  • MEGA: a biologist-centric software for evolutionary analysis...
  • PhyML

  • Referenced in 11 articles [sw10915]
  • PhyML is a software that estimates maximum likelihood...
  • SplitsTree

  • Referenced in 30 articles [sw12234]
  • SplitsTree: A program for analyzing and visualizing evolutionary...
  • DupTree

  • Referenced in 4 articles [sw12376]
  • DupTree: a program for large-scale phylogenetic analyses...
  • BEAGLE

  • Referenced in 4 articles [sw12586]
  • BEAGLE: An Application Programming Interface and High-Performance...