• BioPortal

  • Referenced in 13 articles [sw22917]
  • BioPortal: ontologies and integrated data resources at the click of a mouse. Biomedical ontologies provide ... bioportal.bioontology.org) is an open repository of biomedical ontologies that provides access via Web services ... browsers to ontologies developed in OWL, RDF, OBO format and Protégé frames. BioPortal functionality includes ... ability to browse, search and visualize ontologies. The Web interface also facilitates community-based participation...
  • pLoc-mPlant

  • Referenced in 27 articles [sw25191]
  • mPlant” by extracting the optimal GO (Gene Ontology) information into the Chou’s general PseAAC...
  • MAFRA

  • Referenced in 15 articles [sw02353]
  • MAFRA -- A MApping FRAmework for distributed ontologies. Ontologies as means for conceptualizing and structuring domain ... need for interoperability, mapping mechanisms between distributed ontologies in the Semantic Web are required ... incremental and dynamic framework for mapping distributed ontologies...
  • Ontop

  • Referenced in 16 articles [sw22931]
  • Regime. We present an extension of the ontology-based data access platform Ontop that supports ... input SPARQL query, OWL 2 QL ontology and R2RML mappings can be rewritten ... query rewriting, -mappings compiling R2RML mappings with ontology hierarchies, and -mapping optimisations using SQL expressivity...
  • Euk-PLoc

  • Referenced in 24 articles [sw22420]
  • hybridizing the information derived from the gene ontology database and amphiphilic pseudo amino acid composition...
  • Hum-PLoc

  • Referenced in 24 articles [sw26863]
  • samples are expressed by hybridizing the gene ontology (GO) database and amphiphilic pseudo amino acid...
  • pLoc-mVirus

  • Referenced in 23 articles [sw24439]
  • mVirus” by extracting the optimal GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...
  • pLoc-mGneg

  • Referenced in 23 articles [sw25190]
  • Gram-negative bacterial proteins by deep gene ontology learning via general PseAAC. Information...
  • BiNGO

  • Referenced in 14 articles [sw13896]
  • Cytoscape plugin to assess overrepresentation of Gene Ontology categories in biological networks. Summary: The Biological ... Networks Gene Ontology tool (BiNGO) is an open-source Java tool to determine which Gene ... Ontology (GO) terms are significantly overrepresented in a set of genes. BiNGO can be used...
  • LUBM

  • Referenced in 22 articles [sw14975]
  • design such benchmarks. The LUBM features an ontology for the university domain, synthetic OWL data...
  • OntoEdit

  • Referenced in 11 articles [sw01793]
  • OntoEdit: Collaborative ontology development for the semantic web Ontologies now play an important role ... people and applications. Typically the development of ontologies involves collaborative efforts of multiple persons. OntoEdit ... ontology editor that integrates numerous aspects of ontology engineering. This paper focuses on collaborative development ... ontologies with OntoEdit which is guided by a comprehensive methodology...
  • iATC-mHyb

  • Referenced in 21 articles [sw24529]
  • address this problem, using the DO (Drug Ontology) approach based on the ChEBI (Chemical Entities...
  • Cyc

  • Referenced in 20 articles [sw16452]
  • software combines an unparalleled common sense ontology and knowledge base with a powerful reasoning engine...
  • pLoc-mHum

  • Referenced in 20 articles [sw27661]
  • mHum’ by extracting the crucial GO (Gene Ontology) information into the general PseAAC (Pseudo Amino...
  • PROMPT

  • Referenced in 9 articles [sw09801]
  • PROMPT suite: interactive tools for ontology merging and mapping. Researchers in the ontology-design field ... have developed the content for ontologies in many domain areas. This distributed nature of ontology ... large number of ontologies covering overlapping domains. In order for these ontologies to be reused ... suite of tools for managing multiple ontologies. These suite provides users with a uniform framework...
  • OntoDLV

  • Referenced in 9 articles [sw30415]
  • OntoDLV: An ASP-based Systemfor Enterprise Ontologies. Enterprise/Corporate ontologies are widely adopted to conceptualize business ... OntologyWeb Language (OWL) assumptions, also because such ontologies frequently stem from relational databases, where both ... specification and reasoning on enterprise ontologies. OntoDLV implements a powerful ontology representation language, called OntoDLP ... extending (disjunctive) ASP with all the main ontology features including classes, inheritance, relations and axioms...
  • AIM@SHAPE

  • Referenced in 18 articles [sw04072]
  • reflected in accompanying metadata specifed by shape ontologies developed by the AIM@SHAPE consortium. Incorporation...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • binding sites, Enzyme Commission numbers and Gene Ontology terms. An estimate of accuracy...
  • iLoc-Gpos

  • Referenced in 18 articles [sw22418]
  • well as hybridizing the information of gene ontology and the sequential evolution information, a novel...
  • KAON

  • Referenced in 9 articles [sw02329]
  • KAON -- the Karlsruhe Ontology and Semantic Web Tool Suite KAON is an open-source ontology ... includes a comprehensive tool suite allowing easy ontology creation and management and provides a framework ... building ontology-based applications. An important focus of KAON is scalable and efficient reasoning with ... ontologies...