• FOAM

  • Referenced in 6 articles [sw09800]
  • FOAM - A Framework for Ontology Alignment and Mapping. In this demo we present FOAM ... novel tool for aligning and mapping ontologies. It is based on latest research efforts ... applications are given. The Framework for Ontology Alignment and Mapping (FOAM) is available through ... documentation of FOAM, and some ontologies to test the tool. Further, there...
  • Anchor-PROMPT

  • Referenced in 8 articles [sw09802]
  • ontologies covering overlapping domains, which researchers now need to merge or align ... another. The processes of ontology alignment and merging are usually handled manually and often constitute ... identified by lexical matching. AnchorPROMPT treats an ontology as a graph with classes as nodes...
  • PROMPT

  • Referenced in 9 articles [sw09801]
  • these ontologies to be reused, they first need to be merged or aligned ... uniform framework for comparing, aligning, and merging ontologies, maintaining versions, translating between different formalisms...
  • KitAMO

  • Referenced in 2 articles [sw09798]
  • tool for evaluating ontology alignment strategies. Ontologies are an important technology for the Semantic ... terms in the different ontologies, i.e. we need to align them. Currently, there exist ... systems that support users in aligning ontologies, but not many comparative evaluations have been performed ... KitAMO framework for comparative evaluation of ontology alignment strategies and their combinations and present...
  • SAMBO

  • Referenced in 3 articles [sw09799]
  • SAMBO—A system for aligning and merging biomedical ontologies. Due to the recent explosion ... able to use multiple ontologies they have to be aligned or merged. In this paper ... propose a framework for aligning and merging ontologies. Further, we developed a system for aligning ... merging biomedical ontologies (SAMBO) based on this framework. The framework is also a first step...
  • XMap++

  • Referenced in 1 article [sw29530]
  • campaign. XMap++ is a scalable ontology alignment tools capable of matching large scale ontology. This...
  • NETAL

  • Referenced in 3 articles [sw34152]
  • global network alignment. NETAL outperforms other global alignment methods in terms of several measurements, such ... number of common Gene Ontology terms between aligned proteins. As the running time of NETAL...
  • WoLF PSORT

  • Referenced in 11 articles [sw27721]
  • alignments of the query to similar proteins and links to UniProt and Gene Ontology...
  • SMART

  • Referenced in 16 articles [sw17187]
  • context of protein domain structure, and to align these displays to provide schematic comparisons ... ability to query SMART by Gene Ontology terms, improved structure database searching and batch retrieval...
  • MeLinDa

  • Referenced in 0 articles [sw36781]
  • linking tools to take advantage of ontology alignments...
  • I-TASSER

  • Referenced in 18 articles [sw17207]
  • dimensional (3D) atomic models from multiple threading alignments and iterative structural assembly simulations. The function ... binding sites, Enzyme Commission numbers and Gene Ontology terms. An estimate of accuracy...
  • ROMULUS

  • Referenced in 1 article [sw33115]
  • that direction with the Repository of Ontologies for MULtiple USes, ROMULUS, which is the first ... machine-processable, modularised, aligned, and logic-based merged foundational ontologies. In addition to the typical...
  • ConFunc

  • Referenced in 2 articles [sw35349]
  • annotation. We present ConFunc, an automated Gene Ontology (GO)-based protein function prediction approach, which ... sequences identified by PSI-BLAST into sub-alignments according to their GO annotations. Conserved residues...
  • L-GRAAL

  • Referenced in 2 articles [sw34161]
  • with the state-of-the-art network aligners on the largest available PPI networks from ... using the semantic similarity of their Gene Ontology annotations and observe that L-GRAAL best...
  • AlignNemo

  • Referenced in 0 articles [sw34159]
  • Integrate Homology and Topology. Local network alignment is an important component of the analysis ... concept of semantic similarity applied to Gene Ontology vocabularies. The binaries of AlignNemo and supplementary...
  • GENE-counter

  • Referenced in 1 article [sw20039]
  • without an available genome reference sequence. For alignments, GENE-counter is configured for CASHX, Bowtie ... assessing differentially expressed features for enriched gene ontology (GO) terms. Results are transparent and data...
  • Coq

  • Referenced in 1835 articles [sw00161]
  • Coq is a formal proof management system. It...
  • Isabelle

  • Referenced in 624 articles [sw00454]
  • Isabelle is a generic proof assistant. It allows...
  • MapReduce

  • Referenced in 252 articles [sw00546]
  • MapReduce is a new parallel programming model initially...
  • Matlab

  • Referenced in 12640 articles [sw00558]
  • MATLAB® is a high-level language and interactive...