• FatiGO

  • Referenced in 21 articles [sw12318]
  • tool for finding significant associations of Gene ontology terms with groups of genes. Summary ... simple but powerful procedure to extract Gene Ontology (GO) terms that are significantly over...
  • pLoc-mEuk

  • Referenced in 31 articles [sw24440]
  • called ”pLoc-mEuk” by extracting the key GO (Gene Ontology) information into the general PseAAC...
  • pLoc-mPlant

  • Referenced in 27 articles [sw25191]
  • called ”pLoc-mPlant” by extracting the optimal GO (Gene Ontology) information into the Chou...
  • pLoc-mVirus

  • Referenced in 24 articles [sw24439]
  • called ”pLoc-mVirus” by extracting the optimal GO (Gene Ontology) information into the general PseAAC...
  • MOVE

  • Referenced in 3 articles [sw02550]
  • MOVE: A distributed framework for materialized ontology view extraction. The use of ontologies lies ... work in the area of sub-ontology extraction where each user may extract optimized ... ontologies from an existing base ontology. The extraction process consists of a number of independent ... used, our proposed approach for distributed ontology extraction will play an important role in improving...
  • pLoc-mHum

  • Referenced in 21 articles [sw27661]
  • called ‘pLoc-mHum’ by extracting the crucial GO (Gene Ontology) information into the general PseAAC...
  • KAON2

  • Referenced in 4 articles [sw09838]
  • stand-alone server providing access to ontologies in a distributed manner using RMI, An inference ... such as Protégé, A module for extracting ontology instances from relational databases...
  • YAGO

  • Referenced in 51 articles [sw11909]
  • present YAGO, a light-weight and extensible ontology with high coverage and quality. YAGO builds ... HASONEPRIZE). The facts have been automatically extracted from Wikipedia and unified with WordNet, using...
  • MnM

  • Referenced in 5 articles [sw17517]
  • APIs to link to ontology servers and for integrating information extraction tools ... early example of the next generation of ontology editors, being web-based, oriented to semantic...
  • AIM@SHAPE

  • Referenced in 17 articles [sw04072]
  • reflected in accompanying metadata specifed by shape ontologies developed by the AIM@SHAPE consortium. Incorporation ... Software Repository currently allows us to automatically extract metadata from certain shape categories. Additionally...
  • OntoDLV

  • Referenced in 7 articles [sw30415]
  • rule-based reasoning on top of OWL ontologies. The system is already used ... world applications including agent-based systems, information extraction, and text classification...
  • OpenDMAP

  • Referenced in 4 articles [sw23127]
  • OpenDMAP is an ontology-driven, rule-based concept analysis and information extraction system. Unlike traditional...
  • PRSentiMiner

  • Referenced in 1 article [sw36835]
  • fuzzy opinion words ontology. Normalized TFIDF weighting scheme is applied to extract the most informative ... product features, and fuzzy opinion words ontology is constructed based on HowNet. Then ... fuzzy opinion words ontology and BMI (Balanced Mutual Information) method to extract evaluation words...
  • Swoogle

  • Referenced in 14 articles [sw25441]
  • retrieval system for the Semantic Web. It extracts metadata for each discovered document, and computes ... interesting properties we compute is ontology rank, a measure of the importance of a Semantic...
  • iASA

  • Referenced in 3 articles [sw01494]
  • ontology. iASA is based on the combination of information extraction (specifically, the Similarity-based Rule ... generalization. In the annotation phase, iASA exploits ontology knowledge to refine the annotation it proposes...
  • iProLINK

  • Referenced in 1 article [sw01469]
  • bibliography mapping, annotation extraction, protein named entity recognition, and protein ontology development. The data sources ... bibliography mapping and annotation extraction include mapped citations (PubMed ID to protein entry and feature ... data sources for entity recognition and ontology development include a protein name dictionary, word token...
  • DR-Prolog

  • Referenced in 4 articles [sw30410]
  • ontological knowledge in RDF(S) and OWL, is compatible with RuleML, and enables extracting meaningful...
  • HCGene

  • Referenced in 3 articles [sw30021]
  • methods to process and analyze the Gene Ontology and the FunCat taxonomy in order ... functional classification of genes. HCGene allows the extraction of subgraphs and subtrees related to specific...
  • svcR

  • Referenced in 1 article [sw19768]
  • seen as an efficient cluster extraction if clusters are separable ... into ontological classes and help to define regular expression rules for information extraction in documents...
  • BioPrompt-box

  • Referenced in 3 articles [sw35377]
  • BioPrompt-box: an ontology-based clustering tool for searching in biological databases. Background: High-throughput ... folders that ease their browsing and knowledge extraction. We investigate this approach on biological data ... called The BioPrompt-boxsoftware system which deploys ontology-driven clustering strategies for making the searching...