• Gaggle

  • Referenced in 4 articles [sw20341]
  • protein and protein-DNA interactions), functional associations (operon, chromosomal proximity, phylogenetic pattern), metabolic pathways (KEGG...
  • PGTdb

  • Referenced in 2 articles [sw26880]
  • through NCBI Taxonomy and the Ribosomal RNA Operon Copy Number Database umdb, respectively. PGTdb...
  • KINSOLVER

  • Referenced in 1 article [sw00488]
  • some classic biological circuits, like the $lac$ operon and $qa$ gene cluster as well...
  • Macaulay2

  • Referenced in 1924 articles [sw00537]
  • Macaulay2 is a software system devoted to supporting...
  • SageMath

  • Referenced in 2021 articles [sw00825]
  • Sage (SageMath) is free, open-source math software...
  • SINGULAR

  • Referenced in 1509 articles [sw00866]
  • SINGULAR is a Computer Algebra system (CAS) for...
  • Sostools

  • Referenced in 290 articles [sw00891]
  • We are pleased to introduce SOSTOOLS, a free...
  • LIBSVM

  • Referenced in 1200 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • BoolNet

  • Referenced in 18 articles [sw07365]
  • BoolNet: Generation, reconstruction, simulation and analysis of synchronous...
  • Ginsim

  • Referenced in 33 articles [sw09090]
  • GINsim: A software suite for the qualitative modelling...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • Polynome

  • Referenced in 6 articles [sw12584]
  • Parameter estimation for Boolean models of biological networks...
  • WebLogo

  • Referenced in 25 articles [sw17263]
  • WebLogo: A sequence logo generator. WebLogo generates sequence...
  • BLAST

  • Referenced in 251 articles [sw17334]
  • Basic Local Alignment Search Tool. BLAST finds regions...
  • Docker

  • Referenced in 28 articles [sw18506]
  • Docker is the world’s leading software containerization...
  • BooleSim

  • Referenced in 2 articles [sw20432]
  • BooleSim: an interactive Boolean network simulator. SUMMARY: BooleSim...
  • ADAM

  • Referenced in 8 articles [sw21957]
  • ADAM: analysis of discrete models of biological systems...
  • GeneMarkS

  • Referenced in 6 articles [sw23024]
  • GeneMarkS: a self-training method for prediction of...
  • Pfam

  • Referenced in 105 articles [sw23108]
  • Pfam: clans, web tools and services. Pfam is...