• spatstat

  • Referenced in 142 articles [sw04429]
  • empty space statistics, Fry plots, pair correlation function, kernel smoothed intensity, relative risk estimation with...
  • RandNLA

  • Referenced in 22 articles [sw41749]
  • definite matrix can encode the correlations between all pairs of n objects, or the edge...
  • sbw

  • Referenced in 19 articles [sw21948]
  • variances and correlations and also, for example, the quantiles of interactions of pairs and triples...
  • RDFTools

  • Referenced in 2 articles [sw30881]
  • computing radial distribution functions and other pair correlation functions from electron diffraction patterns of disordered ... enable quick processing of publication ready, quantitative pair distribution function information. In the development...
  • AAindex

  • Referenced in 47 articles [sw26861]
  • biochemical properties of amino acids and pairs of amino acids. It consists of two sections ... related entries in terms of the correlation coefficient, and the actual data. The database...
  • PFCorr

  • Referenced in 3 articles [sw14194]
  • that maximizes the correlation between a pair of input scalar-valued functions representing molecular structures ... Exhaustive solutions to the rigid-body correlation problem take advantage of the fast Fourier transform...
  • CCMpred

  • Referenced in 1 article [sw17014]
  • prediction of protein residue–residue contacts from correlated mutations. Motivation: Recent breakthroughs in protein residue ... methods that can distinguish direct couplings between pairs of columns ... multiple sequence alignment from merely correlated pairs, i.e. to separate direct from indirect effects...
  • sdt

  • Referenced in 1 article [sw16956]
  • coupled harmonic oscillator basis and calculates correlation coefficients, a measure of similarity ... nuclear interaction (such as pairing correlations) within a general Hamiltonian. The program handles the radial...
  • skyrme_rpa

  • Referenced in 1 article [sw10709]
  • cases where the effects of pairing correlations and of deformation can be ignored. The full...
  • ibdreg

  • Referenced in 2 articles [sw24151]
  • response IBD sharing for relative pairs. Account for correlations of IBD statistics and covariates...
  • PCOAT

  • Referenced in 1 article [sw35662]
  • different statistical methods to detect highly correlated position pairs, amino acid pairs, individual positions...
  • rmscca

  • Referenced in 1 article [sw23317]
  • datasets and forms the most highly correlated possible pairs of linear combinations between them. Each ... that new information is gleaned from each pair. By looking at the magnitude of coefficient ... employed a method known as sparse canonical correlation analysis (SCCA), while adding estimation which ... have used SCCA to find multiple canonical pairs for extended knowledge about the datasets...
  • NetOnZeroDXC

  • Referenced in 1 article [sw39857]
  • computation of zero-delay cross-correlation between pairs of time series. The software implements...
  • JBlockCreator

  • Referenced in 1 article [sw33495]
  • plotting tool for illustrating the correlation of pairs of measurements. The software meets a critical...
  • PSICOV

  • Referenced in 7 articles [sw17010]
  • contact predictions are usually made by identifying correlated mutations within multiple sequence alignments (MSAs), most ... theoretic approach of calculating mutual information between pairs of sites in proteins. These predictions ... previously demonstrated corrections for phylogenetic and entropic correlation noise and allows accurate discrimination of direct...
  • DGCA

  • Referenced in 1 article [sw17777]
  • save, visualize, and interpret differential correlations of identifier-pairs across the entire identifier space ... Also contains several functions to perform differential correlation analysis on clusters (i.e., modules) or genes...
  • ennemi

  • Referenced in 1 article [sw37793]
  • many variable pairs. Our package provides methods for common correlation analysis tasks using...
  • bzinb

  • Referenced in 1 article [sw41969]
  • parameters. Also estimates the underlying correlation of the a pair of count data...
  • CorShrink

  • Referenced in 1 article [sw37289]
  • much to shrink correlations by combining information across all pairs of variables. One key feature ... among pairs of variables. Numerical studies suggest CorShrink is competitive with other popular correlation shrinkage...