• PAP

  • Referenced in 3 articles [sw33379]
  • Pedigree Analysis Package (PAP) . The Pedigree Analysis Package (PAP) comprises a set of FORTRAN ... Elston & Stewart 1971] or simulating phenotypes on pedigree members using genetic models...
  • GENEHUNTER

  • Referenced in 4 articles [sw18773]
  • constraints currently limit exact multipoint linkage analysis to pedigrees of moderate size. We introduce ... algorithms that allow analysis of larger pedigrees by reducing the time and memory requirements...
  • MAPMAKER

  • Referenced in 8 articles [sw18435]
  • maps requires multipoint linkage analysis of particular types of pedigrees. We describe here a computer ... efficient algorithm that allows simultaneous multipoint analysis of any number of loci. MAPMAKER also includes...
  • LOT

  • Referenced in 2 articles [sw35330]
  • tool for linkage analysis of ordinal traits for pedigree data. Summary: Existing linkage-analysis methods ... tool that performs linkage analysis of ordinal traits for pedigree data. It implements a latent...
  • ribd

  • Referenced in 1 article [sw34165]
  • suite, a collection of packages for pedigree analysis...
  • S.A.G.E.

  • Referenced in 3 articles [sw30160]
  • genetic analysis of family, pedigree and individual data. The S.A.G.E. source code is available...
  • Pedig

  • Referenced in 1 article [sw34167]
  • Pedig: a fortran package for pedigree analysis suited for large populations. This fortran 77 software ... suited to the analysis of very large populations (up to several tens of million individuals ... coefficients, and to characterize the quality of pedigree information...
  • FISHER

  • Referenced in 1 article [sw27857]
  • software package, designed for pedigree analysis and easily adapted for repeated measures and longitudinal data...
  • Pedcheck

  • Referenced in 4 articles [sw08985]
  • performance of linkage analysis, elimination of all Mendelian inconsistencies in the pedigree data is essential ... recognized until the stage of running linkage-analysis software. The effort then required to find ... erroneous genotypes and to cross-reference pedigree and marker data that may have been recoded...
  • PedVizApi

  • Referenced in 1 article [sw38313]
  • interactive, visual analysis of extended pedigrees. PedVizApi is a Java Api for the visual analysis ... large and complex pedigrees. It provides all the necessary functionality for the interactive exploration ... construction of visual analytic applications for the analysis of family based data...
  • MAIA

  • Referenced in 1 article [sw25468]
  • complex segregation analysis in animals. Allow analysis of pedigrees where founders come from two different...
  • PedGenie

  • Referenced in 4 articles [sw35514]
  • PedGenie: an analysis approach for genetic association testing in extended pedigrees and genealogies of arbitrary...
  • PedPeel

  • Referenced in 1 article [sw10511]
  • approach is common in linkage analysis of large extended pedigrees. Various peeling procedures, based ... selection of peeling order in zero-loop pedigrees with incomplete genotypic information. It is especially ... into the existing software packages for linkage analysis based on the Elston-Stewart algorithm...
  • paramlink

  • Referenced in 1 article [sw17221]
  • Parametric linkage analysis and other likelihood-based pedigree analyses based on the Elston-Stewart algorithm ... computation of marker genotype distributions. Multipoint analysis is provided through a convenient MERLIN wrapper. Includes ... utility functions for creating, manipulating and plotting pedigrees, markers and linkage results...
  • MAN_H_PG

  • Referenced in 1 article [sw25469]
  • Software for complex segregation analysis of quantitative traits on large pedigrees without loops...
  • MENDEL

  • Referenced in 6 articles [sw14990]
  • Mendel: the Swiss army knife of genetic analysis programs. Summary: Mendel ... methods, ranging from parametric linkage in large pedigrees to genome-wide association with rare variants...
  • MasterBayes

  • Referenced in 0 articles [sw17391]
  • MCMC Methods for Pedigree Reconstruction and Analysis. The primary aim of MasterBayes ... MCMC techniques to integrate over uncertainty in pedigree configurations estimated from molecular markers and phenotypic...
  • SimPed

  • Referenced in 5 articles [sw15080]
  • data, there is great interest in analyzing pedigree haplotype data. Intermarker linkage disequilibrium for microsatellite ... strong linkage disequilibrium between marker loci. Linkage analysis (parametric and nonparametric) and family-based association ... large number of loci for pedigree structures. SimPed is a program that quickly generates haplotype...
  • SIMLA

  • Referenced in 5 articles [sw00862]
  • environmental covariates in the simulated pedigrees, with all possible multiplicative interaction effects between them. This ... performance of different linkage and association analysis methods applied to complex human phenotypes. SIMLA...
  • FamAgg

  • Referenced in 0 articles [sw18967]
  • aggregation of traits in large pedigrees. Summary: Familial aggregation analysis is the first fundamental step ... clustering of complex phenotypes in very large pedigrees. Such pedigrees can be utilized to calculate...