• simPATHy

  • Referenced in 1 article [sw23961]
  • method for simulating data from perturbed biological PATHways. Summary: In the omic ... plethora of potentially useful multivariate statistical approaches has been proposed, but their evaluation is hindered ... reference condition and a perturbation of it. Our approach is built upon probabilistic graphical models...
  • PrivKV

  • Referenced in 2 articles [sw42194]
  • Local differential privacy (LDP), where each user perturbs her data locally before sending ... first designing a baseline approach PrivKV within the same ”perturbation-calibration” paradigm as existing...
  • joda

  • Referenced in 2 articles [sw20391]
  • differential expression of the genes in the perturbation experiments. Here, the known TF targets ... differential expression analysis is performed using our approach implemented ... bgmm package. The approach performs partially supervised mixture modeling of the perturbation data. (2) Computing...
  • BioMark

  • Referenced in 5 articles [sw14240]
  • PCLDA, PLSDA, and several t-tests. Two approaches for selecting cutoffs can be used ... stability of model coefficients under perturbation, and the other on higher criticism...
  • turboTDDFT 2.0

  • Referenced in 2 articles [sw18214]
  • algorithms within time-dependent density-functional perturbation theory. We present a new release ... Liouville-Lanczos approach to time-dependent density-functional perturbation theory, and a newly developed Davidson...
  • ddepn

  • Referenced in 1 article [sw14723]
  • generated after external perturbation of network components. We extend our approach by two novel methods...
  • MRCC

  • Referenced in 0 articles [sw26733]
  • energy derivatives and response functions, arbitrary perturbative CC approaches. Many features of the package...
  • CSI

  • Referenced in 1 article [sw13904]
  • nonparametric Bayesian approach to network inference from multiple perturbed time series gene expression data. Here ... identification (CSI) package, a Gaussian process based approach to inferring gene regulatory networks (GRNs) from...
  • pAQFT

  • Referenced in 7 articles [sw11711]
  • under local symmetries in the framework of perturbative algebraic quantum field theory (pAQFT). Our main ... language of homological algebra, we compare different approaches to quantization of gauge theories...
  • CFOUR

  • Referenced in 1 article [sw27006]
  • molecular properties. Virtually all approaches based on Møller-Plesset (MP) perturbation theory and the coupled ... most of these have complementary analytic derivative approaches within the package as well. Studies...
  • YAP3

  • Referenced in 7 articles [sw08955]
  • detect transposed subsequences, and is less perturbed by spurious additional statements. The paper concludes with ... further illustrating the flexibility of the YAP approach...
  • TRANSWESD

  • Referenced in 1 article [sw17199]
  • concern: (i) new statistical approaches for generating high-quality perturbation graphs from systematic perturbation experiments...
  • FLUVSIM

  • Referenced in 9 articles [sw40401]
  • this program include (1) a simple approach to place channel, levee, and crevasse sands within ... simulated annealing and non-random perturbation rules for conditioning to extensive soft facies-proportion data...
  • ATC

  • Referenced in 1 article [sw39352]
  • core and factor perturbations. Furthermore, a Householder-reflector-based approach is proposed to compress...
  • COVAIN

  • Referenced in 1 article [sw10556]
  • corresponding pathways this approach allows for a systematic investigation of perturbation sites in the biochemical...
  • CEACOL

  • Referenced in 1 article [sw07789]
  • coloring We present an extraction and expansion approach for the graph coloring problem. The extraction ... simple perturbation based tabu search algorithm is used. The proposed approach is evaluated...
  • SE2COL

  • Referenced in 1 article [sw07790]
  • coloring We present an extraction and expansion approach for the graph coloring problem. The extraction ... simple perturbation based tabu search algorithm is used. The proposed approach is evaluated...
  • E2COL

  • Referenced in 1 article [sw07791]
  • coloring We present an extraction and expansion approach for the graph coloring problem. The extraction ... simple perturbation based tabu search algorithm is used. The proposed approach is evaluated...
  • QmeQ

  • Referenced in 1 article [sw36800]
  • electron interactions using various approximate master equation approaches. The package provides a framework for calculating ... treated perturbatively to lowest order in the tunneling couplings, the possible approaches are Pauli (classical...
  • quadprogIP

  • Referenced in 7 articles [sw36327]
  • fundamental results on the solution of perturbed linear systems to impose bounds ... performance of this MILP-based solution approach, labeled quadprogIP, with quadprogBB, BARON, and CPLEX...