• iPhos-PseEn

  • Referenced in 16 articles [sw23954]
  • iPhos-PseEn: Identifying phosphorylation sites in proteins by fusing different pseudo components into an ensemble ... classifier. Protein phosphorylation is a posttranslational modification (PTM or PTLM), where a phosphoryl group ... protein molecule. The most commonly phosphorylated amino acids occur at serine (S), threonine ... tyrosine (Y). Protein phosphorylation plays a significant role in a wide range of cellular processes...
  • MESSI

  • Referenced in 21 articles [sw33875]
  • Wiuf (2012a)], sequential distributive and processive multisite phosphorylation networks, most of the examples in [Angeli ... phosphorylation cascades, two component systems as in [Kothamachu et al. (2015)], the bacterial EnvZ/OmpR network...
  • iPhos-PseEvo

  • Referenced in 17 articles [sw23953]
  • iPhos-PseEvo: Identifying Human Phosphorylated Proteins by Incorporating Evolutionary Information into General PseAAC via Grey ... System Theory. Protein phosphorylation plays a critical role in human body by altering the structural ... predict whether it may be phosphorylated or may not? This is no doubt a very...
  • KinasePhos

  • Referenced in 8 articles [sw22468]
  • server for identifying protein kinase-specific phosphorylation sites based on sequences and coupling patterns ... importance of protein phosphorylation in cellular control, many researches are undertaken to predict the kinase ... specific phosphorylation sites. Referred to our previous work, KinasePhos 1.0, incorporated profile hidden Markov model ... with flanking residues of the kinase-specific phosphorylation sites. Herein, a new web server, KinasePhos...
  • Quokka

  • Referenced in 5 articles [sw27666]
  • accurate prediction of kinase family-specific phosphorylation sites in the human proteome. Motivation: Kinase-regulated ... phosphorylation is a ubiquitous type of post-translational modification (PTM) in both eukaryotic and prokaryotic ... cells. Phosphorylation plays fundamental roles in many signalling pathways and biological processes, such as protein ... revealed that signalling defects caused by aberrant phosphorylation are highly associated with a variety...
  • Phospho.ELM

  • Referenced in 10 articles [sw29348]
  • Phospho.ELM is a database of experimentally verified phosphorylation sites in eukaryotic proteins...
  • ELM

  • Referenced in 8 articles [sw17021]
  • compartment targeting, protein–protein interaction, regulation by phosphorylation, acetylation, glycosylation and a host of other...
  • AutoMotif

  • Referenced in 4 articles [sw35529]
  • current release of Swiss-Prot database (phosphorylation by various protein kinases, sulfation, acetylation, methylation, amidation...
  • GANNPhos

  • Referenced in 1 article [sw30119]
  • GANNPhos: a new phosphorylation site predictor based on a genetic algorithm integrated neural network. With ... cellular processes are unaffected by protein phosphorylation. Therefore, computational identification of phosphorylation sites is very ... named GANNPhos has been developed to predict phosphorylation sites in proteins. Aided by a genetic ... predicting phosphorylated S, T and Y sites, respectively. When benchmarked against Back-Propagation neural network...
  • HuPho

  • Referenced in 1 article [sw29344]
  • kinases contribute to the regulation of protein phosphorylation homeostasis in the cell. Phosphorylation...
  • pkaPS

  • Referenced in 1 article [sw27726]
  • pkaPS: prediction of protein kinase A phosphorylation sites with the simplified kinase-substrate binding model...
  • BMCSER

  • Referenced in 1 article [sw29888]
  • biochemical mechanisms. Numerical examples, including a double phosphorylation model, are presented demonstrating the scientific applications...
  • Expression2Kinases

  • Referenced in 1 article [sw34967]
  • data, protein–protein interactions and kinase–substrate phosphorylation reactions, we can better identify regulatory mechanisms...
  • PhosphoPredict

  • Referenced in 0 articles [sw25089]
  • novel bioinformatics approach to predict kinase-specific phosphorylation substrates and sites in the human proteome ... predict kinase-specific substrates and the corresponding phosphorylation sites for 12 human kinases, including ... identified a large number of potential phosphorylated substrates of the 12 kinases. The predicted phosphoproteomic ... hypothesis-driven studies of kinase-specific phosphorylation targets...
  • MATCONT

  • Referenced in 443 articles [sw00551]
  • MATCONT: Matlab software for bifurcation study of dynamical...
  • Mathematica

  • Referenced in 6360 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • PPM

  • Referenced in 64 articles [sw00728]
  • PPM -- a highly efficient parallel particle-mesh library...
  • R

  • Referenced in 10082 articles [sw00771]
  • R is a language and environment for statistical...
  • SUNDIALS

  • Referenced in 241 articles [sw00927]
  • SUNDIALS was implemented with the goal of providing...
  • AUTO

  • Referenced in 943 articles [sw01059]
  • AUTO is a software for continuation and bifurcation...