• CpGcluster

  • Referenced in 4 articles [sw35410]
  • neighboring CpGs should differ for bulk and island CpGs. A new algorithm (CpGcluster) is presented ... simultaneously, the highest overlap with vertebrate Phylogenetic Conserved Elements (PhastCons). CpGcluster’s CGIs overlapping with ... highest statistical significance, as compared to the islands in other genome locations, thus qualifying CpGcluster...
  • SigHunt

  • Referenced in 1 article [sw30007]
  • finder optimized for eukaryotic genomes. Motivation: Genomic islands (GIs) are DNA fragments incorporated into ... these methods unreliable, and so labour-intensive phylogenetic searches are used instead. Results: We present...
  • Maple

  • Referenced in 5373 articles [sw00545]
  • The result of over 30 years of cutting...
  • Mathematica

  • Referenced in 6355 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Matlab

  • Referenced in 13544 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • R

  • Referenced in 9969 articles [sw00771]
  • R is a language and environment for statistical...
  • GMRFLib

  • Referenced in 308 articles [sw06641]
  • Gaussian Markov random fields. Theory and applications. Researchers...
  • RAxML

  • Referenced in 44 articles [sw07716]
  • Parallel inference of a 10.000-taxon phylogeny with...
  • PAUP*

  • Referenced in 57 articles [sw07834]
  • PAUP*: phylogenetic analysis under parsimony. PAUP* version 4.0...
  • BayesDA

  • Referenced in 1310 articles [sw11008]
  • BayesDA: Functions and Datasets for the book ”Bayesian...
  • BLAST

  • Referenced in 251 articles [sw17334]
  • Basic Local Alignment Search Tool. BLAST finds regions...
  • Pfam

  • Referenced in 105 articles [sw23108]
  • Pfam: clans, web tools and services. Pfam is...
  • TNT

  • Referenced in 5 articles [sw29610]
  • TNT, a free program for phylogenetic analysis. TNT...