• AAindex

  • Referenced in 47 articles [sw26861]
  • database of numerical indices representing various physicochemical and biochemical properties of amino acids and pairs...
  • PseKNC

  • Referenced in 31 articles [sw22436]
  • long-range sequence order information, via the physicochemical properties of its constituent oligonucleotides. Therefore ... their need by selecting various parameters and physicochemical properties. Furthermore, for the convenience...
  • iNuc-PhysChem

  • Referenced in 24 articles [sw22453]
  • sequence-based predictor for identifying nucleosomes via physicochemical properties. Nucleosome positioning has important roles ... comparison among the profiles of twelve DNA physicochemical features between the nucleosomal and linker sequences ... that nucleosomal sequences have some position-specific physicochemical features, which can be used ... identification of nucleosomal sequences by incorporating these physicochemical properties into a 1788-D (dimensional) feature...
  • propy

  • Referenced in 27 articles [sw22402]
  • calculating the widely used structural and physicochemical features of proteins and peptides from amino acid ... transition and distribution of various structural and physicochemical properties and two types of pseudo amino...
  • iPPI-Esml

  • Referenced in 26 articles [sw22413]
  • interactions of proteins by incorporating their physicochemical properties and wavelet transforms into PseAAC. A cell ... PseAAC (pseudo amino acid composition): (1) the physicochemical properties derived from the constituent amino acids...
  • SUPG

  • Referenced in 31 articles [sw08373]
  • transport enables a better understanding of the physicochemical processes developed during the electrophoretic separations...
  • iDNA6mA-PseKNC

  • Referenced in 21 articles [sw27663]
  • methyladenosine sites by incorporating nucleotide physicochemical properties into PseKNC. N6-methyladenine (6mA) is one kind ... PseKNC that is established by incorporating nucleotide physicochemical properties into Pseudo K-tuple Nucleotide Composition...
  • 2L-piRNA

  • Referenced in 25 articles [sw27667]
  • problems together. Here, by incorporating the physicochemical properties of nucleotides into the pseudo K-tuple...
  • PROFEAT

  • Referenced in 14 articles [sw16924]
  • server for computing structural and physicochemical features of proteins and peptides from amino acid sequence ... Sequence-derived structural and physicochemical features have frequently been used in the development of statistical ... server for computing commonly-used structural and physicochemical features of proteins and peptides from amino ... transition and distribution of various structural and physicochemical properties. In addition, it can also compute...
  • iAMP-2L

  • Referenced in 23 articles [sw22416]
  • PseAAC were featured by incorporating five physicochemical properties. The novel classifier is called iAMP...
  • repDNA

  • Referenced in 12 articles [sw16473]
  • sequences by incorporating user-defined physicochemical properties and sequence-order effects. In order to develop ... generating the widely used features reflecting the physicochemical properties and sequence-order effects of DNAs ... sequence in terms of their specific physicochemical properties; the third group calculates six pseudo nucleotide ... keep considerable sequence-order information via the physicochemical properties of its constituent oligonucleotides. In addition...
  • 2D-MH

  • Referenced in 21 articles [sw19727]
  • representation of protein sequences based on the physicochemical properties of their constituent amino acids. Introduction...
  • iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • dimensional vector, formed by incorporating its physicochemical, sequence evolution, biochemical, and structural disorder information into...
  • iOri-Human

  • Referenced in 13 articles [sw23955]
  • human origin of replication by incorporating dinucleotide physicochemical properties into pseudo nucleotide composition. The initiation ... pseudo amino acid composition) that 96 physicochemical properties for the 16 possible constituent dinucleotides have...
  • PseAAC-General

  • Referenced in 16 articles [sw22430]
  • desired modes. In every mode, 544 physicochemical properties of the amino acids are available...
  • iTIS-PseTNC

  • Referenced in 15 articles [sw22449]
  • iTIS-PseTNC,” was developed by incorporating the physicochemical properties into the pseudo trinucleotide composition, quite...
  • iEzy-drug

  • Referenced in 15 articles [sw22455]
  • generated via incorporating sequential evolution information and physicochemical features derived from its sequence...
  • MemHyb

  • Referenced in 15 articles [sw25194]
  • sequence information. We consider both evolutionary and physicochemical features and provide them to our classification...
  • PseKNC-General

  • Referenced in 8 articles [sw16606]
  • widely used nucleotide structural and physicochemical properties of both DNA and RNA sequences. PseKNC-General ... Type II PseKNC. In every mode, >100 physicochemical properties are available for choosing. Moreover...
  • pSLIP

  • Referenced in 6 articles [sw35549]
  • based protein subcellular localization prediction using multiple physicochemical properties. Results: In this paper, we propose ... Vector Machines (SVMs) in conjunction with multiple physicochemical properties of amino acids to predict protein ... Conclusion: This study presents a physicochemical property based protein localization prediction algorithm. Unlike other algorithms...