• iMethyl-PseAAC

  • Referenced in 21 articles [sw22443]
  • native proteins during the biosynthesis, their polypeptide chains created by ribosome’s translating mRNA will...
  • DYANA

  • Referenced in 11 articles [sw08628]
  • protein Antennapedia (C39S) homeodomain, which comprises unstructured polypeptide segments at the two chain termini ... used for studies of long unconstrained polypeptides, the results obtained in this paper show that...
  • PIPE

  • Referenced in 6 articles [sw26869]
  • engine based on the re-occurring short polypeptide sequences between known interacting protein pairs. Background ... suggests that a finite set of short polypeptide signals seem to be responsible...
  • AGGRESCAN

  • Referenced in 3 articles [sw22400]
  • evaluation of ”hot spots” of aggregation in polypeptides. BACKGROUND: Protein aggregation correlates with the development ... methods to anticipate the aggregation properties of polypeptides is receiving increasing attention. AGGRESCAN ... properties displayed by globular proteins, natively unfolded polypeptides, amyloidogenic proteins and proteins found in bacterial ... during storage or recombinant production of bioactive polypeptides or polypeptide sets...
  • BOMP

  • Referenced in 4 articles [sw11337]
  • program that predicts whether or not a polypeptide sequence from a Gram-negative bacterium ... found 103 of a total of 4346 polypeptide sequences to be possible integral β-barrel...
  • KnotProt

  • Referenced in 5 articles [sw21418]
  • users the knot type of the entire polypeptide chain and of each of its subchains...
  • OligoPred

  • Referenced in 5 articles [sw22481]
  • vivo, some proteins exist as monomers (single polypeptide chains) and others as oligomers. Not like...
  • FoldUnfold

  • Referenced in 4 articles [sw16916]
  • chain. Summary: Identification of disordered regions in polypeptide chains is very important because such regions...
  • MOLDEN

  • Referenced in 4 articles [sw20678]
  • build molecules from scratch, including polypeptides. Molden was also submitted to the QCPE (dead?) (QCPE619...
  • FORESST

  • Referenced in 3 articles [sw26866]
  • predicted helices, strands and coils along the polypeptide chain. When a more extensive library...
  • Sulfinator

  • Referenced in 3 articles [sw35758]
  • prediction of tyrosine sulfation sites in polypeptide chains. The Sulfinator is a software tool that...
  • MesoBioNano

  • Referenced in 1 article [sw18198]
  • systems, such as atomic clusters, fullerenes, nanotubes, polypeptides, proteins, DNA, composite systems, nanofractals...
  • Zyggregator

  • Referenced in 1 article [sw31179]
  • predicted by estimating the propensity of polypeptide chains to form protofibrillar assemblies. In this tutorial...
  • Prodock

  • Referenced in 1 article [sw33075]
  • flexible docking simulations, in particular forward/backward polypeptide chain generation. A comparative study to illustrate...
  • CHARMM36m

  • Referenced in 1 article [sw35721]
  • mackerell.umaryland.edu/charmm_ff.shtml), with improved accuracy in generating polypeptide backbone conformational ensembles for intrinsically disordered peptides...
  • RESCUE

  • Referenced in 0 articles [sw20770]
  • spectrum of a protein or a polypeptide is the prerequisite for advanced NMR studies...
  • UniCon3D

  • Referenced in 0 articles [sw34253]
  • backbone and side chain conformational space of polypeptide chains in a united-residue representation...
  • Mathematica

  • Referenced in 6337 articles [sw00554]
  • Almost any workflow involves computing results, and that...
  • Pajek

  • Referenced in 154 articles [sw03707]
  • Pajek -- analysis and visualization of large networks. Pajek...
  • Algorithm 611

  • Referenced in 34 articles [sw05276]
  • Algorithm 611: Subroutines for Unconstrained Minimization Using a...