• BAPS 2

  • Referenced in 7 articles [sw35649]
  • enhanced possibilities for the analysis of genetic population structure. Bayesian statistical methods based on simulation ... powerful tools for the analysis of genetic population structure. We have previously developed a Markov ... chain Monte Carlo (MCMC) algorithm for characterizing genetically divergent groups based on molecular markers...
  • STRUCTURE

  • Referenced in 72 articles [sw13672]
  • structure. Its uses include inferring the presence of distinct populations, assigning individuals to populations, studying ... identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals ... applied to most of the commonly-used genetic markers, including SNPS, microsatellites, RFLPs and AFLPs...
  • fastSTRUCTURE

  • Referenced in 5 articles [sw25207]
  • data sets. Tools for estimating population structure from genetic data are now used ... variety of applications in population genetics. However, inferring population structure in large modern data sets...
  • MSMS

  • Referenced in 7 articles [sw34261]
  • soft selective sweeps in structured populations or the genetic footprint of local adaptation. The implementation...
  • BIANCA

  • Referenced in 13 articles [sw02081]
  • composite laminates is a multi-population genetic algorithm capable to deal with unconstrained and constrained ... representation of the information, i.e., the structure of populations and individuals in BIANCA ... information is extensively exploited during genetic operations. Moreover, we developed proper and original strategies ... general problems of optimisation of materials and structures. In this paper, we describe specifically...
  • POPS

  • Referenced in 1 article [sw24119]
  • POPS: A Software for Prediction of Population Genetic Structure Using Latent Regression Models. The software ... POPS performs inference of population genetic structure using multilocus genotypic data. Based on a hierarchical ... which POPS predicts changes in spatial population structure assuming a particular scenario of climate change...
  • Haploview

  • Referenced in 22 articles [sw11870]
  • last few years has revealed significant haplotype structure in the human genome. The characterization ... patterns, particularly in the context of medical genetic association studies, is becoming a routine research ... provides computation of linkage disequilibrium statistics and population haplotype patterns from primary genotype data...
  • Altruist

  • Referenced in 2 articles [sw32832]
  • package for simulation of genetic evolution in structured or viscous populations. The purpose...
  • CLUMPP

  • Referenced in 3 articles [sw08998]
  • analysis of population structure. Clustering of individuals into populations on the basis of multilocus genotypes ... settings. In population-genetic clustering algorithms, such as BAPS, STRUCTURE and TESS, individual multilocus genotypes...
  • SPAGEDi

  • Referenced in 2 articles [sw07534]
  • characterise the spatial genetic structure of mapped individuals and/or mapped populations using genotype data ... genetic distance), and (delta mu)2 (Goldstein and Pollok 1997) for analyses at the population ... provide ad hoc tests of spatial structure, population differentiation or inbreeding, respectively. A new allele ... sizes carry a relevant information about genetic structure (Hardy & al. 2003 Genetics.pdf). In addition...
  • PGAPack

  • Referenced in 16 articles [sw04922]
  • general-purpose, data-structure-neutral parallel GENETIC ALGORITHM library. It is intended to provide most ... capabilities desired in a genetic algorithm library, in an integrated, seamless, and portable manner. Features ... example problems. Detailed users guide Parameterized POPULATION replacement. Multiple choices for SELECTION, CROSSOVER, and MUTATION...
  • PSMIX

  • Referenced in 5 articles [sw13670]
  • population structure inference via maximum likelihood method. Background: Inference of population stratification and individual admixture ... from genetic markers is an integrative part of a study in diverse situations, such ... studies. Bayesian methods have been proposed for population stratification and admixture inference using multilocus genotypes ... population stratification and individual admixture. Conclusion: Compared with software based on Bayesian methods (e.g., STRUCTURE...
  • hypred

  • Referenced in 4 articles [sw14554]
  • under a count-location model, the genetic structure can include additive and dominance effects ... great flexibility in creating all kinds of populations...
  • GEMMA

  • Referenced in 5 articles [sw23999]
  • account for population stratification and sample structure, and for estimating the proportion of variance ... simultaneously while controlling for population stratification, and for estimating genetic correlations among complex phenotypes ... modeling all markers while controlling for population structure. It estimates variance component/chip heritability, and partitions...
  • Kpax3

  • Referenced in 1 article [sw38618]
  • hidden population structure is an important step in many genetic studies. Often...
  • imfamily

  • Referenced in 2 articles [sw29073]
  • population with family structure. The objective of this article to contribute to the genetic sequences...
  • Qxpak

  • Referenced in 3 articles [sw35126]
  • association analyses. Multiple loci, multiple trait, infinitesimal genetic effects, imprinting, epistasis or sex linked loci ... more importantly - to correct for population structure in association studies. In crosses, two parental lines ... Conclusions: This software aims at simplifying statistical genetic analyses implementing a coherent and unified approach...
  • tess3r

  • Referenced in 1 article [sw25205]
  • population structure based on geographically constrained non-negative matrix factorization and population genetics. tess3r...
  • TESD

  • Referenced in 2 articles [sw35415]
  • dynamic fate of TEs in structured populations, can be extended by using more specific molecular ... useful for teaching population genetics and genomics...
  • xbreed

  • Referenced in 0 articles [sw19536]
  • simulation of populations with flexible genome structures and trait genetic architectures. It can also...