• Eigenstrat

  • Referenced in 53 articles [sw33845]
  • EIGENSOFT package combines functionality from our population genetics methods (Patterson ... marker’s variation in frequency across ancestral populations, minimizing spurious associations while maximizing power...
  • Mesquite

  • Referenced in 15 articles [sw09680]
  • some of its modules concern population genetics, while others do non-phylogenetic multivariate analysis. Because...
  • BIANCA

  • Referenced in 13 articles [sw02081]
  • composite laminates is a multi-population genetic algorithm capable to deal with unconstrained and constrained ... information, i.e., the structure of populations and individuals in BIANCA ... information is extensively exploited during genetic operations. Moreover, we developed proper and original strategies...
  • abcrf

  • Referenced in 11 articles [sw21308]
  • Normal toy example and a population genetics example dealing with human population evolution. All methods...
  • ABCtoolbox

  • Referenced in 11 articles [sw08813]
  • different areas including genomics or population genetics...
  • IMPUTE

  • Referenced in 11 articles [sw14375]
  • genotype calling program CHIAMO and the population genetic simulator HAPGEN, and it produces output that...
  • ABC

  • Referenced in 276 articles [sw10950]
  • research branch that models the population of interacting agents or swarms that are able ... functions and the results produced by ABC, Genetic Algorithm (GA), Particle Swarm Algorithm...
  • BAPS 2

  • Referenced in 7 articles [sw35649]
  • enhanced possibilities for the analysis of genetic population structure. Bayesian statistical methods based on simulation ... powerful tools for the analysis of genetic population structure. We have previously developed a Markov ... chain Monte Carlo (MCMC) algorithm for characterizing genetically divergent groups based on molecular markers...
  • simuPOP

  • Referenced in 6 articles [sw11732]
  • simuPOP: a forward-time population genetics simulation environment. Summary: simuPOP is a forward-time population ... genetics simulation environment. The core of simuPOP is a scripting language (Python) that provides ... number of objects and functions to manipulate populations, and a mechanism to evolve populations forward ... simulations ranging from implementation of basic population genetics models to generating datasets under complex evolutionary...
  • LAMARC

  • Referenced in 7 articles [sw11443]
  • LAMARC is a program which estimates population-genetic parameters such as population size, population growth...
  • Arlequin

  • Referenced in 5 articles [sw11442]
  • integrated software package for population genetics data analysis. Arlequin ver 3.0 is a software package ... several basic and advanced methods for population genetics data analysis, like the computation of standard ... genetic diversity indices, the estimation of allele and haplotype frequencies, tests of departure from linkage ... demographic equilibrium, estimation or parameters from past population expansions, and thorough analyses of population subdivision...
  • HapMix

  • Referenced in 6 articles [sw33847]
  • distinct continental ancestry in admixed populations, using dense genetic data.For details, see the HAPMIX paper ... Chromosomal Segments of Distinct Ancestry in Admixed Populations. Identifying the ancestry of chromosomal segments ... method, HAPMIX, which employs an explicit population genetic model to perform such local ancestry inference ... utility for inferring ancestry, learning about ancestral populations, and inferring dates of admixture. We validate...
  • STRUCTURE

  • Referenced in 71 articles [sw13672]
  • identifying migrants and admixed individuals, and estimating population allele frequencies in situations where many individuals ... applied to most of the commonly-used genetic markers, including SNPS, microsatellites, RFLPs and AFLPs...
  • AABC

  • Referenced in 6 articles [sw16116]
  • performance of AABC on a population-genetic model of natural selection, as well ... model of the admixture history of hybrid populations...
  • genetics

  • Referenced in 4 articles [sw24196]
  • package genetics: Population Genetics. Classes and methods for handling genetic data. Includes classes to represent...
  • fastSTRUCTURE

  • Referenced in 4 articles [sw25207]
  • data sets. Tools for estimating population structure from genetic data are now used ... wide variety of applications in population genetics. However, inferring population structure in large modern data...
  • Bio++

  • Referenced in 5 articles [sw23039]
  • sequence analysis, phylogenetics, molecular evolution and population genetics. Bio++ is Object Oriented and is designed...
  • MAPMAKER

  • Referenced in 8 articles [sw18435]
  • experimental and natural populations. With the advent of RFLPs, genetic linkage maps are now being ... number of organisms including both inbred experimental populations such as maize ... outhred natural populations such as humans. Accurate construction of such genetic maps requires multipoint linkage...
  • Serial SimCoal

  • Referenced in 3 articles [sw24734]
  • Serial SimCoal: A population genetics model for data from multiple populations and points in time ... Serial SimCoal, a program that models population genetic data from multiple time points, as with ... complex demographic histories, and migration between multiple populations. Further, we incorporate a statistical package...
  • ogaraK

  • Referenced in 2 articles [sw35175]
  • ogaraK: a population genetics simulator for malaria. Motivation: The evolution of resistance in Plasmodium falciparum ... major global health threat. Population genetics approaches are commonly used to model the spread ... malaria biology, existing forward-time population genetics simulators cannot suitably model Plasmodium falciparum malaria. Results ... Here we present ogaraK, a population genetics simulator for modelling the spread of drug-resistant...