• ALLUVSIM

  • Referenced in 6 articles [sw13299]
  • inconsistency in the size and positioning of complicated features relative to the well data...
  • WebLogo

  • Referenced in 24 articles [sw17263]
  • consensus sequences and can rapidly reveal significant features of the alignment otherwise difficult to perceive ... stacks of letters, one stack for each position in the sequence. The overall height ... relative frequency of the corresponding amino or nucleic acid at that position. WebLogo has been ... enhanced recently with additional features and options, to provide a convenient and highly configurable sequence...
  • YARF

  • Referenced in 4 articles [sw21233]
  • system of constraints which relate the feature positions to the vehicle position on the road...
  • MISSEL

  • Referenced in 1 article [sw22344]
  • novel algorithm that relies on a feature selection technique to extract multiple and locally adjacent ... biological framework where the relative position of a feature is relevant (e.g., sequenced data...
  • Memtype-2L

  • Referenced in 39 articles [sw16472]
  • Post-Genomic Age and the relatively much slower progress in using biochemical experiments to determine ... anchored, and (8) peripheral. MemType-2L is featured by incorporating the evolution information through representing ... protein samples with the Pse-PSSM (Pseudo Position-Specific Score Matrix) vectors, and by containing...
  • FUGUE

  • Referenced in 9 articles [sw16894]
  • comparison (http://www-cryst.bioc.cam.ac.uk/fugue/), has three key features. (1) Improved environment-specific substitution tables. Substitutions ... position of the structure is determined according to its solvent accessibility, its position relative ... that the combination of these three key features implemented in FUGUE improves both homology recognition...
  • SLAM

  • Referenced in 5 articles [sw17327]
  • syntenic genomic regions. A key feature of the method is the ability to enhance gene ... complete exon/intron structures of genes in two related but unannotated sequences of DNA. SLAM ... suitably related pair of organisms, most notably with fewer false-positive predictions compared to previous ... coding sequence. CNS annotation is a novel feature of SLAM and may be useful...
  • r2VIM

  • Referenced in 1 article [sw27009]
  • downstream analyses (i.e. for feature selection while controlling false positive rates). We propose ... selection approach for RF using a recurrent relative variable importance measure (r2VIM) and have implemented ... package. Importance values for each feature (SNP) are calculated relative to an observed minimal importance ... thus exhibiting good control of false positive feature selection...
  • PipMaker

  • Referenced in 8 articles [sw17257]
  • understandable form. Positions along the horizontal axis can be labeled with features such as exons ... comparing genomic sequences from any two related species, although the types of information that...
  • ig

  • Referenced in 8 articles [sw07988]
  • Distributions. The inverse Gaussian distribution is a positively skewed probability model that has received great ... model to the data. The capabilities and features of the ig package are illustrated using ... real data sets. Furthermore, some new results related to the inverse Gaussian type distribution...
  • POIMs

  • Referenced in 2 articles [sw35360]
  • understand for humans and cannot easily be related to biological facts. Results: To make ... profitable, we introduce the concept of positional oligomer importance matrices (POIMs) and propose an efficient ... feature weighting, POIMs take the underlying correlation structure of k-mer features induced by overlaps ... related k-mers into account. POIMs can be seen as a powerful generalization of sequence...
  • Signal-3L

  • Referenced in 16 articles [sw26857]
  • sites in human, plant, animal, eukaryotic, Gram-positive, and Gram-negative protein sequences, respectively ... through a voting system. Signal-3L is featured by high success prediction rates with short ... further support the demand of the related areas, the signal peptides identified by Signal...
  • ExonHunter

  • Referenced in 4 articles [sw23816]
  • finding system that outperforms existing systems and features several new ideas and approaches. Our system ... expressed sequence tags and protein databases of related species) into a gene finder based ... expressed as partial probabilistic statements about positions in the sequence and their annotation. We then...
  • DeepTrack

  • Referenced in 3 articles [sw27576]
  • Convolutional Neural Network (CNN) for learning effective feature representations of the target object ... selection mechanism. The sampling mechanism randomly generates positive and negative samples from different temporal distributions ... which are generated by taking the temporal relations and label noise into account. Finally ... existing trackers illustrates the superiority of the feature representations which are learned...
  • ProSQL

  • Referenced in 1 article [sw01765]
  • clearer view of their positive and negative features. The approach adopted has been to build ... designer can define extensions to the basic relational database...
  • Phast

  • Referenced in 2 articles [sw25880]
  • display prophage sequences and prophage features. Relative to other prophage identification tools, PHAST ... files, provide richly annotated tables on prophage features and prophage “quality” and distinguish between intact ... finding tools, with sensitivity of 85.4% and positive predictive value...
  • DroidSieve

  • Referenced in 1 article [sw33518]
  • family of related malware. DroidSieve exploits obfuscation-invariant features and artifacts introduced by obfuscation mechanisms ... same time, these purely static features are designed for processing at scale ... accuracy with zero false positives; for family identification of obfuscated malware, we achieve 99.26% accuracy...
  • GRAIL

  • Referenced in 1 article [sw17329]
  • anonymous DNA sequence by recognizing features related to protein-coding regions and the boundaries ... coding regions, and then combines the recognized features using a neural network system. Localized coding ... portions of test genes with a false positive rate of about 10% A number...
  • Kink-detector

  • Referenced in 2 articles [sw29680]
  • applications. Motivated by a cutting edge problem related to the shape of (alpha)-helices ... first time, quantifies the uncertainty in atom positions around the cylinder. We propose a change ... this data to identify salient features to construct Kink-detector, test its performance and gain...
  • UmUTracker

  • Referenced in 1 article [sw19828]
  • position by analyzing synthetic and experimentally acquired holograms. Finally, to highlight the full program features ... oriented programming. UmUTracker is suitable for studies related to: particle dynamics, cell localization, colloids...