• PSI-BLAST

  • Referenced in 230 articles [sw17324]
  • position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific...
  • Memtype-2L

  • Referenced in 39 articles [sw16472]
  • with the Pse-PSSM (Pseudo Position-Specific Score Matrix) vectors, and by containing an ensemble...
  • MemHyb

  • Referenced in 15 articles [sw25194]
  • sequence encoding scheme by fusing position specific scoring matrix and split amino acid composition...
  • LOCSVMPSI

  • Referenced in 11 articles [sw22457]
  • vector machine (SVM) and the position-specific scoring matrix generated from profiles of PSI-BLAST...
  • POSSUM

  • Referenced in 8 articles [sw24532]
  • form of a Position-Specific Scoring Matrix (PSSM) is a widely used and highly informative...
  • JASPAR

  • Referenced in 40 articles [sw18502]
  • positionspecific scoring matrices. JASPAR is an open‐access database of annotated, high‐quality, matrix...
  • LORIS

  • Referenced in 3 articles [sw28697]
  • using only sequence features (position-specific scoring matrix, averaged cumulative hydropathy and predicted accessibility...
  • fsaLib

  • Referenced in 3 articles [sw14518]
  • from regular expressions or PSSM (Position Specific Scoring Matrix) and then is able to count...
  • PSOFuzzySVM-TMH

  • Referenced in 3 articles [sw27664]
  • this model, evolutionary based information position specific scoring matrix and discrete based information 6-letter...
  • GNBSL

  • Referenced in 2 articles [sw26874]
  • frequency matrix (PSFM) and a position-specific scoring matrix (PSSM) for each protein sequence...
  • ConFunc

  • Referenced in 2 articles [sw35349]
  • alignment for which a position specific scoring matrix is generated. This combination of steps produces...
  • CyclinPred

  • Referenced in 1 article [sw22405]
  • composition and PSI-BLAST generated Position Specific Scoring Matrix (PSSM) profiles. Results obtained from Leave...
  • RVMAB

  • Referenced in 1 article [sw24037]
  • represent protein sequences on a Position Specific Scoring Matrix (PSSM). Secondly, Principal Component Analysis...
  • DRIMust

  • Referenced in 1 article [sw29654]
  • value indication and as a Position Specific Scoring Matrix. Comparing DRIMust with other state...
  • PSLDoc

  • Referenced in 1 article [sw24765]
  • calculated according to a position specific score matrix, which includes sequence evolutionary information. Then, PLSA...
  • StackDPPred

  • Referenced in 0 articles [sw34125]
  • evolutionary profile, called the position-specific scoring matrix (PSSM) profile, alone and the accuracies...
  • FIMO

  • Referenced in 6 articles [sw17298]
  • motif described by a position-specific frequency matrix. Results: We describe Find Individual Motif Occurrences ... protein sequences with motifs described as position-specific scoring matrices. The program computes...
  • PHAT

  • Referenced in 3 articles [sw17270]
  • transmembrane-specific substitution matrix. Motivation: Database searching algorithms for proteins use scoring matrices based ... transmembrane) matrix, which significantly outperforms generalized matrices and a previously published transmembrane matrix in searches ... transmembrane queries. We conclude that a better matrix can be constructed by using background frequencies ... twilight zone, where low-scoring true positives have scores indistinguishable from high-scoring false positives...
  • LAPACK

  • Referenced in 1642 articles [sw00503]
  • LAPACK is written in Fortran 90 and provides...
  • Maple

  • Referenced in 5124 articles [sw00545]
  • The result of over 30 years of cutting...