• TFMPvalue

  • Referenced in 5 articles [sw12326]
  • accurate P-value computation for Position Weight Matrices. TFMPvalue provides the accurate calculation ... value with score threshold for Position Weight Matrices, or the score with given P-value...
  • PatSearch

  • Referenced in 3 articles [sw17167]
  • consensus sequences, secondary structure elements and position-weight matrices. It can also allow for mismatches/mispairings...
  • MotifCM

  • Referenced in 1 article [sw09377]
  • precompiled library of motifs described as position weight matrices (PWMs), each...
  • Expression2Kinases

  • Referenced in 1 article [sw34967]
  • chromatin immuno-precipitation (ChIP)-seq/chip and position weight matrices (PWMs) data, protein–protein interactions...
  • TFBSTools

  • Referenced in 2 articles [sw18912]
  • sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx...
  • POIMs

  • Referenced in 2 articles [sw35360]
  • introduce the concept of positional oligomer importance matrices (POIMs) and propose an efficient algorithm ... contrast to the raw SVM feature weighting, POIMs take the underlying correlation structure...
  • TEXTNN

  • Referenced in 1 article [sw37110]
  • histogram measures of mean, standard deviation and weighted-rank fill ratio. This procedure is applied ... evaluated. The program also calculates contingency matrices, global accuracy and kappa coefficient for the training ... overall results are considered quite positive...
  • ANSYS

  • Referenced in 703 articles [sw00044]
  • ANSYS offers a comprehensive software suite that spans...
  • ATLAS

  • Referenced in 199 articles [sw00056]
  • This paper describes the Automatically Tuned Linear Algebra...
  • cdd

  • Referenced in 115 articles [sw00114]
  • The program cdd+ (cdd, respectively) is a C...
  • CGAL

  • Referenced in 384 articles [sw00118]
  • The goal of the CGAL Open Source Project...
  • CoCoA

  • Referenced in 654 articles [sw00143]
  • CoCoA is a system for Computations in Commutative...
  • Coq

  • Referenced in 1880 articles [sw00161]
  • Coq is a formal proof management system. It...
  • Expokit

  • Referenced in 198 articles [sw00258]
  • Expokit provides a set of routines aimed at...
  • FGb

  • Referenced in 247 articles [sw00286]
  • FGb/Gb libraryGb is a program (191 420 lines...
  • GAP

  • Referenced in 3154 articles [sw00320]
  • GAP is a system for computational discrete algebra...
  • gfun

  • Referenced in 144 articles [sw00344]
  • The gfun package provides tools for determining and...
  • gmp

  • Referenced in 282 articles [sw00363]
  • GMP is a free library for arbitrary precision...
  • Gmsh

  • Referenced in 720 articles [sw00366]
  • Gmsh is a 3D finite element grid generator...
  • GQRAT

  • Referenced in 35 articles [sw00373]
  • The concern here is with Gauss-type quadrature...