
TFMPvalue
 Referenced in 5 articles
[sw12326]
 accurate Pvalue computation for Position Weight Matrices. TFMPvalue provides the accurate calculation ... value with score threshold for Position Weight Matrices, or the score with given Pvalue...

PatSearch
 Referenced in 3 articles
[sw17167]
 consensus sequences, secondary structure elements and positionweight matrices. It can also allow for mismatches/mispairings...

MotifCM
 Referenced in 1 article
[sw09377]
 precompiled library of motifs described as position weight matrices (PWMs), each...

Expression2Kinases
 Referenced in 1 article
[sw34967]
 chromatin immunoprecipitation (ChIP)seq/chip and position weight matrices (PWMs) data, protein–protein interactions...

TFBSTools
 Referenced in 2 articles
[sw18912]
 sites. It includes matrices conversion between Position Frequency Matirx (PFM), Position Weight Matirx...

POIMs
 Referenced in 2 articles
[sw35360]
 introduce the concept of positional oligomer importance matrices (POIMs) and propose an efficient algorithm ... contrast to the raw SVM feature weighting, POIMs take the underlying correlation structure...

TEXTNN
 Referenced in 1 article
[sw37110]
 histogram measures of mean, standard deviation and weightedrank fill ratio. This procedure is applied ... evaluated. The program also calculates contingency matrices, global accuracy and kappa coefficient for the training ... overall results are considered quite positive...

ANSYS
 Referenced in 703 articles
[sw00044]
 ANSYS offers a comprehensive software suite that spans...

ATLAS
 Referenced in 199 articles
[sw00056]
 This paper describes the Automatically Tuned Linear Algebra...

cdd
 Referenced in 115 articles
[sw00114]
 The program cdd+ (cdd, respectively) is a C...

CGAL
 Referenced in 384 articles
[sw00118]
 The goal of the CGAL Open Source Project...

CoCoA
 Referenced in 654 articles
[sw00143]
 CoCoA is a system for Computations in Commutative...

Coq
 Referenced in 1880 articles
[sw00161]
 Coq is a formal proof management system. It...

Expokit
 Referenced in 198 articles
[sw00258]
 Expokit provides a set of routines aimed at...

FGb
 Referenced in 247 articles
[sw00286]
 FGb/Gb libraryGb is a program (191 420 lines...

GAP
 Referenced in 3154 articles
[sw00320]
 GAP is a system for computational discrete algebra...

gfun
 Referenced in 144 articles
[sw00344]
 The gfun package provides tools for determining and...

gmp
 Referenced in 282 articles
[sw00363]
 GMP is a free library for arbitrary precision...

Gmsh
 Referenced in 720 articles
[sw00366]
 Gmsh is a 3D finite element grid generator...

GQRAT
 Referenced in 35 articles
[sw00373]
 The concern here is with Gausstype quadrature...