• PSI-BLAST

  • Referenced in 231 articles [sw17324]
  • position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific...
  • Memtype-2L

  • Referenced in 39 articles [sw16472]
  • with the Pse-PSSM (Pseudo Position-Specific Score Matrix) vectors, and by containing an ensemble...
  • LOCSVMPSI

  • Referenced in 11 articles [sw22457]
  • vector machine (SVM) and the position-specific scoring matrix generated from profiles of PSI-BLAST...
  • POSSUM

  • Referenced in 8 articles [sw24532]
  • form of a Position-Specific Scoring Matrix (PSSM) is a widely used and highly informative...
  • LORIS

  • Referenced in 3 articles [sw28697]
  • using only sequence features (position-specific scoring matrix, averaged cumulative hydropathy and predicted accessibility...
  • GNBSL

  • Referenced in 2 articles [sw26874]
  • frequency matrix (PSFM) and a position-specific scoring matrix (PSSM) for each protein sequence...
  • StackDPPred

  • Referenced in 0 articles [sw34125]
  • evolutionary profile, called the position-specific scoring matrix (PSSM) profile, alone and the accuracies...
  • FIMO

  • Referenced in 6 articles [sw17298]
  • motif described by a position-specific frequency matrix. Results: We describe Find Individual Motif Occurrences ... protein sequences with motifs described as position-specific scoring matrices. The program computes...
  • Matlab

  • Referenced in 12721 articles [sw00558]
  • MATLAB® is a high-level language and interactive...
  • LIBSVM

  • Referenced in 1124 articles [sw04879]
  • LIBSVM is a library for Support Vector Machines...
  • EMBOSS

  • Referenced in 35 articles [sw10917]
  • EMBOSS is ”The European Molecular Biology Open Software...
  • ClustalW

  • Referenced in 136 articles [sw12016]
  • CLUSTAL W: improving the sensitivity of progressive multiple...
  • PISCES

  • Referenced in 31 articles [sw16873]
  • PISCES: a protein sequence culling server. Summary: PISCES...
  • TRANSFAC

  • Referenced in 74 articles [sw17201]
  • TRANSFAC: an integrated system for gene expression regulation...
  • BLAST

  • Referenced in 247 articles [sw17334]
  • Basic Local Alignment Search Tool. BLAST finds regions...
  • JASPAR

  • Referenced in 42 articles [sw18502]
  • JASPAR: an open‐access database for eukaryotic transcription...
  • UniProt

  • Referenced in 131 articles [sw21320]
  • UniProt: a hub for protein information. UniProt is...
  • ESLpred

  • Referenced in 20 articles [sw22403]
  • ESLpred: SVM-based method for subcellular localization of...