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PSI-BLAST
- Referenced in 232 articles
[sw17324]
- position-specific score matrix, and searching the database using this matrix. The resulting Position-Specific...
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Memtype-2L
- Referenced in 39 articles
[sw16472]
- with the Pse-PSSM (Pseudo Position-Specific Score Matrix) vectors, and by containing an ensemble...
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LOCSVMPSI
- Referenced in 11 articles
[sw22457]
- vector machine (SVM) and the position-specific scoring matrix generated from profiles of PSI-BLAST...
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POSSUM
- Referenced in 8 articles
[sw24532]
- form of a Position-Specific Scoring Matrix (PSSM) is a widely used and highly informative...
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LORIS
- Referenced in 3 articles
[sw28697]
- using only sequence features (position-specific scoring matrix, averaged cumulative hydropathy and predicted accessibility...
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GNBSL
- Referenced in 2 articles
[sw26874]
- frequency matrix (PSFM) and a position-specific scoring matrix (PSSM) for each protein sequence...
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StackDPPred
- Referenced in 0 articles
[sw34125]
- evolutionary profile, called the position-specific scoring matrix (PSSM) profile, alone and the accuracies...
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FIMO
- Referenced in 6 articles
[sw17298]
- motif described by a position-specific frequency matrix. Results: We describe Find Individual Motif Occurrences ... protein sequences with motifs described as position-specific scoring matrices. The program computes...
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Matlab
- Referenced in 13460 articles
[sw00558]
- MATLAB® is a high-level language and interactive...
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LIBSVM
- Referenced in 1184 articles
[sw04879]
- LIBSVM is a library for Support Vector Machines...
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EMBOSS
- Referenced in 35 articles
[sw10917]
- EMBOSS is ”The European Molecular Biology Open Software...
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ClustalW
- Referenced in 138 articles
[sw12016]
- CLUSTAL W: improving the sensitivity of progressive multiple...
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PISCES
- Referenced in 31 articles
[sw16873]
- PISCES: a protein sequence culling server. Summary: PISCES...
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TRANSFAC
- Referenced in 74 articles
[sw17201]
- TRANSFAC: an integrated system for gene expression regulation...
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BLAST
- Referenced in 248 articles
[sw17334]
- Basic Local Alignment Search Tool. BLAST finds regions...
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JASPAR
- Referenced in 42 articles
[sw18502]
- JASPAR: an open‐access database for eukaryotic transcription...
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UniProt
- Referenced in 136 articles
[sw21320]
- UniProt: a hub for protein information. UniProt is...
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ESLpred
- Referenced in 20 articles
[sw22403]
- ESLpred: SVM-based method for subcellular localization of...